Factsheet for TraesCS5B01G145300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G184100.2
TraesCS6B01G212600.3
TraesCS6D01G171000.1
TraesCS7A01G365600.3
TraesCS7B01G261800.1
TraesCS7D01G356800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G01900.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7D01G356800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G22570.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7D01G356800.1	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G145800.1	Wheat	nucleus	95.55	96.41
TraesCS5A01G146500.1	Wheat	nucleus	89.02	88.76
HORVU5Hr1G046390.2	Barley	nucleus, plastid	89.61	80.97
Os11t0117600-00	Rice	nucleus	18.1	39.61
Zm00001d023332_P001	Maize	nucleus	31.75	33.02
EES15637	Sorghum	nucleus	31.45	31.09
Zm00001d044680_P001	Maize	nucleus	28.78	26.87
TraesCS5B01G145400.1	Wheat	nucleus	19.58	25.1
TraesCS5B01G145500.1	Wheat	nucleus	20.77	22.15
CDY37614	Canola	nucleus	11.28	19.19
AT1G80590.1	Thale cress	nucleus	13.35	19.15
AT1G66600.1	Thale cress	nucleus	13.65	19.09
Bra023211.1-P	Field mustard	nucleus	14.54	18.99
CDY63078	Canola	nucleus	14.54	18.99
CDY12284	Canola	nucleus	14.54	18.99
AT1G66560.1	Thale cress	nucleus	13.95	18.88
CDY37613	Canola	nucleus	10.98	18.69
AT5G01900.1	Thale cress	nucleus	14.24	18.25
Bra008454.1-P	Field mustard	nucleus	10.68	18.18
AT1G66550.1	Thale cress	nucleus	13.65	18.11
CDY04820	Canola	nucleus	13.95	18.01
CDY71652	Canola	nucleus	13.06	17.05
Bra008459.1-P	Field mustard	nucleus	12.46	16.28
Bra028918.1-P	Field mustard	nucleus	13.95	16.21
CDY38684	Canola	nucleus	12.17	15.89
Bra002421.1-P	Field mustard	nucleus	13.06	15.28
CDY71866	Canola	nucleus	12.76	15.14
Bra020196.1-P	Field mustard	nucleus	12.76	15.14
Bra008456.1-P	Field mustard	nucleus	10.98	14.92
CDY37611	Canola	nucleus	10.98	14.92
Bra020197.1-P	Field mustard	nucleus	12.17	14.64
CDY09147	Canola	nucleus	11.87	14.34
AT5G22570.1	Thale cress	nucleus	12.17	14.19
CDY35701	Canola	nucleus	11.87	14.04
CDY26943	Canola	nucleus	11.87	13.89
CDY35694	Canola	nucleus	11.28	12.46

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF36	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS5B01G145300	EnsemblPlants:TraesCS5B01G145300.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:+:272438831..272441093

Molecular Weight (calculated)

36166.7 Da

IEP (calculated)

7.725

GRAVY (calculated)

-0.715

Length

337 amino acids

Sequence
(BLAST)

001: MQRSRGCAPG GEHGWAAADG GMQLQRRERE LVAQLHELLF PSTSPSRSGA SSCSGPAADL YWEHGSPQVK ATASCGGGKR RGGRKRVRED ERHEEGQGQR
101: GGAAPATKAT TRCRRKKQGA TTTTLVTTVP DFDGYQWRKY GQKQIEAAKH PRNYYRCTNS TNQGCPAKRT VQRNDDDGSD DGRPKYTVVY ISEHSCKATE
201: SAAVPVILET TVRTDTAAAP NVAVVPGSRS GAISSETQSP ASSSDITWSS GGSDGGANVP PRERDDYSRM FAIEDDCWGW NASPPAPAAA AALLQEMDFD
301: GPIRSPVHVA AADGSWINDL FVNEPPFVLN SCHLFGL

Best Arabidopsis Sequence Match ( AT2G40740.1 )
(BLAST)

001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS

Arabidopsis Description

WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.