Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra040131.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22570.1 | Bra040131.1-P | AT4G38130.1 | 18776063 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26943 | Canola | nucleus | 82.29 | 82.29 |
| Bra020196.1-P | Field mustard | nucleus | 57.29 | 58.1 |
| Bra020197.1-P | Field mustard | nucleus | 52.78 | 54.29 |
| AT5G22570.1 | Thale cress | nucleus | 52.08 | 51.9 |
| HORVU2Hr1G098280.1 | Barley | nucleus | 5.9 | 37.78 |
| Bra023211.1-P | Field mustard | nucleus | 27.08 | 30.23 |
| Bra008454.1-P | Field mustard | nucleus | 19.79 | 28.79 |
| Bra008459.1-P | Field mustard | nucleus | 24.65 | 27.52 |
| Bra028918.1-P | Field mustard | nucleus | 26.74 | 26.55 |
| HORVU2Hr1G003310.1 | Barley | nucleus | 6.25 | 24.66 |
| Bra008456.1-P | Field mustard | nucleus | 21.18 | 24.6 |
| OQU78675 | Sorghum | nucleus | 18.06 | 24.19 |
| Os12t0116600-01 | Rice | nucleus | 16.32 | 20.35 |
| Os12t0116700-01 | Rice | nucleus | 21.88 | 19.63 |
| Os11t0117400-00 | Rice | nucleus | 18.4 | 19.56 |
| TraesCS2A01G019300.1 | Wheat | nucleus | 17.01 | 19.52 |
| TraesCS2A01G021400.1 | Wheat | nucleus | 9.03 | 19.12 |
| Os11t0117500-01 | Rice | nucleus | 21.18 | 19.06 |
| EES09138 | Sorghum | nucleus | 19.1 | 19.03 |
| TraesCS5A01G146700.1 | Wheat | nucleus | 20.83 | 18.93 |
| TraesCS5A01G146600.1 | Wheat | nucleus | 17.36 | 18.66 |
| TraesCS5B01G145500.1 | Wheat | nucleus | 20.14 | 18.35 |
| TraesCS5B01G145400.1 | Wheat | nucleus | 16.67 | 18.25 |
| TraesCS2D01G051000.1 | Wheat | nucleus | 15.62 | 18.22 |
| TraesCS5D01G145600.1 | Wheat | nucleus | 19.79 | 18.04 |
| TraesCS2A01G052100.1 | Wheat | nucleus | 15.62 | 17.72 |
| TraesCS5D01G145700.1 | Wheat | nucleus | 15.62 | 17.05 |
| EES09141 | Sorghum | nucleus | 15.97 | 16.91 |
| HORVU5Hr1G046430.1 | Barley | nucleus | 19.1 | 16.87 |
| EES16607 | Sorghum | nucleus | 15.62 | 16.85 |
| Zm00001d023336_P001 | Maize | nucleus | 16.32 | 16.43 |
| OQU78673 | Sorghum | nucleus | 13.19 | 16.17 |
| Zm00001d052358_P001 | Maize | nucleus | 17.01 | 16.07 |
| Zm00001d005056_P001 | Maize | nucleus | 16.32 | 15.61 |
| Zm00001d044682_P001 | Maize | plastid | 13.19 | 14.96 |
| Os11t0117600-00 | Rice | nucleus | 7.99 | 14.94 |
| EES09137 | Sorghum | nucleus | 13.89 | 14.76 |
| TraesCS5A01G146500.1 | Wheat | nucleus | 16.67 | 14.2 |
| TraesCS5D01G145800.1 | Wheat | nucleus | 16.32 | 14.07 |
| Zm00001d023332_P001 | Maize | nucleus | 14.93 | 13.27 |
| TraesCS5B01G145300.1 | Wheat | nucleus | 15.28 | 13.06 |
| EES15637 | Sorghum | nucleus | 14.24 | 12.02 |
| HORVU5Hr1G046390.2 | Barley | nucleus, plastid | 15.28 | 11.8 |
| Zm00001d044680_P001 | Maize | nucleus | 14.24 | 11.36 |
| TraesCS2D01G051500.1 | Wheat | cytosol | 7.29 | 10.88 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EnsemblPlantsGene:Bra002421 | EnsemblPlants:Bra002421.1 | EnsemblPlants:Bra002421.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 |
| UniProt:M4CDZ0 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF37 | SMART:SM00774 |
| SUPFAM:SSF118290 | UniParc:UPI000254449F | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : |
Description
AT5G22570 (E=2e-098) WRKY38, ATWRKY38 | WRKY38; transcription factor
Coordinates
chrA10:+:9693574..9694704
Molecular Weight (calculated)
33025.9 Da
IEP (calculated)
5.860
GRAVY (calculated)
-0.927
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSPHEKVVQ AILYGHSCAK RLKLRLEDPM ADDRSVSSYD LAKSIVHCFS NAISILSDQP KSEDDQVSEL SSMDSSPPLP HSKRRKINST NSTKNWRDDS
101: PDPYYDGFLW RKYGQKSIKN SKYERSYYRC SYNIDHDCGA RKHEQQIKEN PPVYRTTYFG HHICKINHNH DAVFTAVEDQ VDDAGSSRII RFGKELDQEK
201: GSHSTGFSLS AKHEESIIKE ETCTDQYREI TGDDKDCQHV MEENQSSLSS SYTPPLSSVS ETDMFDSDLL LNNLDSWDRY GLFDFGVH
101: PDPYYDGFLW RKYGQKSIKN SKYERSYYRC SYNIDHDCGA RKHEQQIKEN PPVYRTTYFG HHICKINHNH DAVFTAVEDQ VDDAGSSRII RFGKELDQEK
201: GSHSTGFSLS AKHEESIIKE ETCTDQYREI TGDDKDCQHV MEENQSSLSS SYTPPLSSVS ETDMFDSDLL LNNLDSWDRY GLFDFGVH
001: MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
Arabidopsis Description
WRKY38Probable WRKY transcription factor 38 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWF1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.