Factsheet for TraesCS5B01G145400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G184100.2
TraesCS6B01G212600.3
TraesCS6D01G171000.1
TraesCS7A01G365600.3
TraesCS7B01G261800.1
TraesCS7D01G356800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G01900.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7D01G356800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G22570.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7D01G356800.1	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G146600.1	Wheat	nucleus	72.24	70.9
TraesCS5D01G145700.1	Wheat	nucleus	61.22	60.98
EES09141	Sorghum	nucleus	46.77	45.22
Zm00001d005056_P001	Maize	nucleus	41.83	36.54
TraesCS5B01G145500.1	Wheat	nucleus	33.46	27.85
AT1G80590.1	Thale cress	nucleus	18.63	20.85
AT1G66600.1	Thale cress	nucleus	18.63	20.33
Bra008454.1-P	Field mustard	nucleus	15.21	20.2
CDY37614	Canola	nucleus	15.21	20.2
CDY37613	Canola	nucleus	15.21	20.2
AT1G66560.1	Thale cress	nucleus	18.63	19.68
TraesCS5B01G145300.1	Wheat	nucleus	25.1	19.58
CDY12284	Canola	nucleus	19.01	19.38
AT1G66550.1	Thale cress	nucleus	18.63	19.29
CDY04820	Canola	nucleus	19.01	19.16
Bra023211.1-P	Field mustard	nucleus	18.63	18.99
CDY63078	Canola	nucleus	18.63	18.99
CDY38684	Canola	nucleus	18.63	18.99
Bra008459.1-P	Field mustard	nucleus	17.87	18.22
CDY71652	Canola	nucleus	17.87	18.22
AT5G01900.1	Thale cress	nucleus	17.49	17.49
Bra028918.1-P	Field mustard	nucleus	19.01	17.24
Bra020196.1-P	Field mustard	nucleus	18.25	16.9
CDY71866	Canola	nucleus	18.25	16.9
CDY26943	Canola	nucleus	18.25	16.67
Bra002421.1-P	Field mustard	nucleus	18.25	16.67
CDY37611	Canola	nucleus	15.21	16.13
Bra008456.1-P	Field mustard	nucleus	15.21	16.13
CDY09147	Canola	nucleus	16.73	15.77
Bra020197.1-P	Field mustard	nucleus	16.73	15.71
CDY35701	Canola	nucleus	16.73	15.44
AT5G22570.1	Thale cress	nucleus	16.73	15.22
CDY35694	Canola	nucleus	15.21	13.11

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF25	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS5B01G145400
EnsemblPlants:TraesCS5B01G145400.1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:272670073..272671163

Molecular Weight (calculated)

29326.2 Da

IEP (calculated)

5.206

GRAVY (calculated)

-0.599

Length

263 amino acids

Sequence
(BLAST)

001: MDLSKNCDHG LAEIEALLRR EQELVTQLRA LILPQLHNVD SGSAELAVQL FDDVIGCSTS VVSKLFTAGS GATTELIDDK SLVRKNSTST AAAIDDKMDE
101: QARPSCVVGR KRRRNDSKRS RSLVTNVPHY DGHQWRKYGQ KNINGRQHAR SYYRCTYTER NCSATKTVQQ QDQDGGGSIY SADAGEDQGA KYTVVYYGDH
201: TCKAGDNISN DIIDHLPNLV DIDLRRGETE RVTAEISEFE MELDVPALLE VLNNSQLNWE IVC

Best Arabidopsis Sequence Match ( AT1G66550.2 )
(BLAST)

001: MVSNIDHKAM EALLRGQGCA NNLKILLENG EISSVSTEPL IHTILDSFSL ALSFMDSPNH PPYHESSSHN MASHMSRRSS KQKLCVAEGL VNYNHDSRTM
101: CPNDGFTWRK YGQKTIKASA HKRCYYRCTY AKDQNCNATK RVQKIKDNPP VYRTTYLGKH VCKAFAVHDD TYSSTMIRFD QVVPEPIMPQ LTTIDHQVIT
201: VEENSAEHIM NQECDINDYL VDDDPFWASQ FPPFPSSDTM FLENISAFD

Arabidopsis Description

WRKY67Probable WRKY transcription factor 67 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.