Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22570.1 | CDY21119 | AT4G38130.1 | 18776063 |
| AT5G22570.1 | CDY30008 | AT4G38130.1 | 18776063 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09147 | Canola | nucleus | 70.88 | 72.4 |
| CDY71866 | Canola | nucleus | 64.21 | 64.44 |
| AT5G22570.1 | Thale cress | nucleus | 48.42 | 47.75 |
| CDY35694 | Canola | nucleus | 50.88 | 47.54 |
| CDY26943 | Canola | nucleus | 46.32 | 45.83 |
| HORVU2Hr1G098280.1 | Barley | nucleus | 5.96 | 37.78 |
| CDY71652 | Canola | nucleus | 26.32 | 29.07 |
| CDY37613 | Canola | nucleus | 20.0 | 28.79 |
| CDY37614 | Canola | nucleus | 20.0 | 28.79 |
| CDY38684 | Canola | nucleus | 25.96 | 28.68 |
| CDY04820 | Canola | nucleus | 25.96 | 28.35 |
| CDY37611 | Canola | nucleus | 24.21 | 27.82 |
| CDY63078 | Canola | nucleus | 24.21 | 26.74 |
| CDY12284 | Canola | nucleus | 24.21 | 26.74 |
| HORVU2Hr1G003310.1 | Barley | nucleus | 6.67 | 26.03 |
| OQU78675 | Sorghum | nucleus | 14.74 | 19.53 |
| Os12t0116700-01 | Rice | nucleus | 20.7 | 18.38 |
| Os12t0116600-01 | Rice | nucleus | 14.74 | 18.18 |
| Os11t0117500-01 | Rice | nucleus | 20.35 | 18.12 |
| TraesCS2D01G051000.1 | Wheat | nucleus | 15.44 | 17.81 |
| TraesCS2A01G021400.1 | Wheat | nucleus | 8.42 | 17.65 |
| TraesCS2A01G052100.1 | Wheat | nucleus | 15.44 | 17.32 |
| Zm00001d044682_P001 | Maize | plastid | 15.44 | 17.32 |
| EES09138 | Sorghum | nucleus | 17.54 | 17.3 |
| EES16607 | Sorghum | nucleus | 16.14 | 17.23 |
| TraesCS2A01G019300.1 | Wheat | nucleus | 15.09 | 17.13 |
| Os11t0117400-00 | Rice | nucleus | 16.14 | 16.97 |
| EES09137 | Sorghum | nucleus | 16.14 | 16.97 |
| TraesCS5A01G146600.1 | Wheat | nucleus | 15.79 | 16.79 |
| TraesCS5B01G145400.1 | Wheat | nucleus | 15.44 | 16.73 |
| TraesCS5D01G145700.1 | Wheat | nucleus | 15.09 | 16.29 |
| TraesCS5D01G145600.1 | Wheat | nucleus | 17.54 | 15.82 |
| TraesCS5B01G145500.1 | Wheat | nucleus | 17.54 | 15.82 |
| TraesCS5A01G146700.1 | Wheat | nucleus | 17.54 | 15.77 |
| Zm00001d052358_P001 | Maize | nucleus | 16.84 | 15.74 |
| Zm00001d023336_P001 | Maize | nucleus | 15.79 | 15.73 |
| EES09141 | Sorghum | nucleus | 14.74 | 15.44 |
| HORVU5Hr1G046430.1 | Barley | nucleus | 17.19 | 15.03 |
| Zm00001d005056_P001 | Maize | nucleus | 15.44 | 14.62 |
| OQU78673 | Sorghum | nucleus | 11.23 | 13.62 |
| Zm00001d023332_P001 | Maize | nucleus | 14.39 | 12.65 |
| TraesCS5A01G146500.1 | Wheat | nucleus | 14.74 | 12.43 |
| TraesCS5B01G145300.1 | Wheat | nucleus | 14.04 | 11.87 |
| TraesCS5D01G145800.1 | Wheat | nucleus | 13.68 | 11.68 |
| EES15637 | Sorghum | nucleus | 13.33 | 11.14 |
| Os11t0117600-00 | Rice | nucleus | 5.96 | 11.04 |
| HORVU5Hr1G046390.2 | Barley | nucleus, plastid | 13.68 | 10.46 |
| TraesCS2D01G051500.1 | Wheat | cytosol | 6.67 | 9.84 |
| Zm00001d044680_P001 | Maize | nucleus | 11.58 | 9.14 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078HDB4 | UniProt:A0A078HDB4 | EnsemblPlants:CDY35701 | ProteinID:CDY35701 |
| ProteinID:CDY35701.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00059111001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31282 |
| PANTHER:PTHR31282:SF37 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EE467B | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g09670DBnaC02g09670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDB4]
Coordinates
chrLK032358:-:198041..199279
Molecular Weight (calculated)
32474.2 Da
IEP (calculated)
7.241
GRAVY (calculated)
-1.126
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTNTLNSM NTSHEKAVQA ILYGQSCAKR LKLQLDHPIA GGRSDNLFSD LSSRDSSSSS SSSSPSPSLP QRSHSKKRKN NNTNSSENWR HDSPDPNYYD
101: GFLWRKYGQK TIKQSKHQRS YYRCSYNIDH ACGARKHEQK IKDNPPVYRT TYFGHHTCNI NHKVHNQDAG LTTVGESVND LENSRMIWFG KDLDQEKESH
201: TSGLSISVKH EEGSIKEETM DQYRGITSHD KDCQNVIKEN HQPSPSGSYT PPSSSGSEID MFDSDLLVED LDLWDRYDMY DFGLR
101: GFLWRKYGQK TIKQSKHQRS YYRCSYNIDH ACGARKHEQK IKDNPPVYRT TYFGHHTCNI NHKVHNQDAG LTTVGESVND LENSRMIWFG KDLDQEKESH
201: TSGLSISVKH EEGSIKEETM DQYRGITSHD KDCQNVIKEN HQPSPSGSYT PPSSSGSEID MFDSDLLVED LDLWDRYDMY DFGLR
001: MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
Arabidopsis Description
WRKY38Probable WRKY transcription factor 38 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWF1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.