Factsheet for TraesCS2A01G052100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G184100.2
TraesCS6B01G212600.3
TraesCS6D01G171000.1
TraesCS7A01G365600.3
TraesCS7B01G261800.1
TraesCS7D01G356800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G01900.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7D01G356800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G22570.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7D01G356800.1	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G098280.1	Barley	nucleus	13.39	75.56
TraesCS2A01G019300.1	Wheat	nucleus	63.78	64.54
TraesCS2A01G021400.1	Wheat	nucleus	33.07	61.76
HORVU2Hr1G003310.1	Barley	nucleus	15.75	54.79
EES09141	Sorghum	nucleus	43.31	40.44
TraesCS5A01G146600.1	Wheat	nucleus	40.55	38.43
Zm00001d005056_P001	Maize	nucleus	40.94	34.55
TraesCS5A01G146700.1	Wheat	nucleus	29.13	23.34
Bra008454.1-P	Field mustard	nucleus	15.75	20.2
CDY37614	Canola	nucleus	15.75	20.2
CDY37613	Canola	nucleus	15.75	20.2
AT1G66600.1	Thale cress	nucleus	17.72	18.67
Bra008459.1-P	Field mustard	nucleus	18.9	18.6
CDY71652	Canola	nucleus	18.9	18.6
AT1G80590.1	Thale cress	nucleus	16.93	18.3
TraesCS5A01G146500.1	Wheat	nucleus	24.02	18.05
CDY38684	Canola	nucleus	18.11	17.83
CDY04820	Canola	nucleus	17.72	17.24
Bra023211.1-P	Field mustard	nucleus	17.32	17.05
CDY12284	Canola	nucleus	17.32	17.05
CDY63078	Canola	nucleus	17.32	17.05
AT1G66560.1	Thale cress	nucleus	16.54	16.87
CDY09147	Canola	nucleus	18.5	16.85
AT5G01900.1	Thale cress	nucleus	17.32	16.73
CDY71866	Canola	nucleus	18.5	16.55
Bra020196.1-P	Field mustard	nucleus	18.5	16.55
Bra020197.1-P	Field mustard	nucleus	18.11	16.43
Bra028918.1-P	Field mustard	nucleus	18.5	16.21
AT1G66550.1	Thale cress	nucleus	16.14	16.14
CDY37611	Canola	nucleus	15.75	16.13
Bra008456.1-P	Field mustard	nucleus	15.75	16.13
CDY26943	Canola	nucleus	17.72	15.62
Bra002421.1-P	Field mustard	nucleus	17.72	15.62
CDY35701	Canola	nucleus	17.32	15.44
AT5G22570.1	Thale cress	nucleus	16.93	14.88
CDY35694	Canola	nucleus	14.96	12.46

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF25	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS2A01G052100	EnsemblPlants:TraesCS2A01G052100.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:+:20592524..20594271

Molecular Weight (calculated)

28262.4 Da

IEP (calculated)

6.032

GRAVY (calculated)

-0.495

Length

254 amino acids

Sequence
(BLAST)

001: MKSSSTMVVN GGSEMDALLL LRRQQELLTQ LRALILPTFR DADGRSADLA ICLFDDIIDC IDGVMSRLQG LSAAGGHGLA TAPFVLADVD VVSPNAGEGQ
101: DEKHVISNVG QKRRRNNDKR SRSLVTVVPH YDGHHWRKYG QKNINGREHA RSYYRCAYTE RNCPATKTIQ QQDHNVTINC EEETAKYIVV YYGHHTCCDD
201: STRNGAKNDP GMDLIQNGKM AGAVTEFQKF DPGDVDMPAL IEVLDNPELN WDII

Best Arabidopsis Sequence Match ( AT5G22570.1 )
(BLAST)

001: MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF

Arabidopsis Description

WRKY38Probable WRKY transcription factor 38 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.