Factsheet for TraesCS2A01G019300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G184100.2
TraesCS6B01G212600.3
TraesCS6D01G171000.1
TraesCS7A01G365600.3
TraesCS7B01G261800.1
TraesCS7D01G356800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G01900.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7D01G356800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G22570.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7D01G356800.1	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G021400.1	Wheat	nucleus	44.22	81.62
HORVU2Hr1G098280.1	Barley	nucleus	14.34	80.0
TraesCS2A01G052100.1	Wheat	nucleus	64.54	63.78
HORVU2Hr1G003310.1	Barley	nucleus	16.33	56.16
EES09141	Sorghum	nucleus	41.43	38.24
TraesCS5A01G146600.1	Wheat	nucleus	39.04	36.57
Zm00001d005056_P001	Maize	nucleus	39.04	32.56
TraesCS2D01G051500.1	Wheat	cytosol	24.7	32.12
TraesCS5A01G146700.1	Wheat	nucleus	30.68	24.29
Bra008454.1-P	Field mustard	nucleus	16.33	20.71
CDY37614	Canola	nucleus	16.33	20.71
CDY37613	Canola	nucleus	16.33	20.71
Bra008459.1-P	Field mustard	nucleus	20.32	19.77
CDY71652	Canola	nucleus	20.32	19.77
TraesCS5A01G146500.1	Wheat	nucleus	25.9	19.23
CDY04820	Canola	nucleus	19.92	19.16
CDY63078	Canola	nucleus	19.52	18.99
CDY38684	Canola	nucleus	19.52	18.99
CDY12284	Canola	nucleus	19.52	18.99
Bra023211.1-P	Field mustard	nucleus	19.52	18.99
Bra028918.1-P	Field mustard	nucleus	21.51	18.62
CDY37611	Canola	nucleus	18.33	18.55
Bra008456.1-P	Field mustard	nucleus	18.33	18.55
AT1G66560.1	Thale cress	nucleus	18.33	18.47
AT1G80590.1	Thale cress	nucleus	17.13	18.3
AT1G66600.1	Thale cress	nucleus	17.53	18.26
AT5G01900.1	Thale cress	nucleus	17.93	17.11
Bra002421.1-P	Field mustard	nucleus	19.52	17.01
AT1G66550.1	Thale cress	nucleus	17.13	16.93
CDY26943	Canola	nucleus	18.73	16.32
AT5G22570.1	Thale cress	nucleus	18.73	16.26
CDY71866	Canola	nucleus	18.33	16.2
Bra020196.1-P	Field mustard	nucleus	18.33	16.2
Bra020197.1-P	Field mustard	nucleus	17.13	15.36
CDY35701	Canola	nucleus	17.13	15.09
CDY09147	Canola	nucleus	16.73	15.05
CDY35694	Canola	nucleus	14.34	11.8

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF25	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS2A01G019300	EnsemblPlants:TraesCS2A01G019300.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:+:8807209..8809005

Molecular Weight (calculated)

28050.0 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.633

Length

251 amino acids

Sequence
(BLAST)

001: MDNKMTSSSM MVVHGGSEMD SLLRRQQELV IQLRALILPA LRDSRSAGLA VDLFDGVIDC INGVISRLQS ITAAGGESAA AFVLGDVISN GAGEGQEEKP
101: VISNAGQKRR RNNEKRSRSL VTIVPHYDGH HWRKYGQKKI NGRQHARSYY KCAYTERNCS ATKTIQQQEH NRTLNCEDET PKYIVVYYGH HSCRDDNTRN
201: GTNNDPCMDL TQSGKMAGAA TDFEKFDQGD LDMSSLMEVF DNPELNWNII C

Best Arabidopsis Sequence Match ( AT5G01900.1 )
(BLAST)

001: MNSCQQKAME KLLHGHGCAN QLLIMDQTES DSSMEREDLA KSVLHCFSDA LSILIDTNDH QDDQSNNSSP QDSSPVLESS RKPLHKRGRK TSMAESSDYH
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS

Arabidopsis Description

WRKY62WRKY62 [Source:UniProtKB/TrEMBL;Acc:A0A178U8T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.