Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01900.1 | CDY21119 | AT4G38130.1 | 18776063 |
| AT5G01900.1 | CDY30008 | AT4G38130.1 | 18776063 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023211.1-P | Field mustard | nucleus | 97.29 | 97.29 |
| CDY12284 | Canola | nucleus | 95.74 | 95.74 |
| CDY04820 | Canola | nucleus | 79.07 | 78.16 |
| AT5G01900.1 | Thale cress | nucleus | 65.5 | 64.26 |
| HORVU2Hr1G098280.1 | Barley | nucleus | 6.2 | 35.56 |
| CDY71866 | Canola | nucleus | 33.72 | 30.63 |
| CDY71652 | Canola | nucleus | 30.62 | 30.62 |
| CDY38684 | Canola | nucleus | 29.84 | 29.84 |
| CDY26943 | Canola | nucleus | 31.01 | 27.78 |
| CDY37611 | Canola | nucleus | 26.36 | 27.42 |
| CDY09147 | Canola | nucleus | 29.07 | 26.88 |
| CDY37613 | Canola | nucleus | 20.16 | 26.26 |
| CDY37614 | Canola | nucleus | 20.16 | 26.26 |
| CDY35694 | Canola | nucleus | 29.46 | 24.92 |
| HORVU2Hr1G003310.1 | Barley | nucleus | 6.98 | 24.66 |
| CDY35701 | Canola | nucleus | 26.74 | 24.21 |
| OQU78675 | Sorghum | nucleus | 17.44 | 20.93 |
| TraesCS2A01G021400.1 | Wheat | nucleus | 10.47 | 19.85 |
| TraesCS5A01G146600.1 | Wheat | nucleus | 20.54 | 19.78 |
| TraesCS2A01G019300.1 | Wheat | nucleus | 18.99 | 19.52 |
| Os12t0116700-01 | Rice | nucleus | 24.03 | 19.31 |
| Os11t0117500-01 | Rice | nucleus | 23.26 | 18.75 |
| TraesCS5B01G145400.1 | Wheat | nucleus | 18.99 | 18.63 |
| Os12t0116600-01 | Rice | nucleus | 16.67 | 18.61 |
| TraesCS5D01G145700.1 | Wheat | nucleus | 18.99 | 18.56 |
| EES09138 | Sorghum | nucleus | 20.16 | 17.99 |
| TraesCS2D01G051000.1 | Wheat | nucleus | 17.05 | 17.81 |
| EES09141 | Sorghum | nucleus | 18.6 | 17.65 |
| Zm00001d044682_P001 | Maize | plastid | 17.05 | 17.32 |
| TraesCS2A01G052100.1 | Wheat | nucleus | 17.05 | 17.32 |
| Zm00001d005056_P001 | Maize | nucleus | 20.16 | 17.28 |
| TraesCS5D01G145600.1 | Wheat | nucleus | 20.93 | 17.09 |
| TraesCS5B01G145500.1 | Wheat | nucleus | 20.93 | 17.09 |
| TraesCS5A01G146700.1 | Wheat | nucleus | 20.93 | 17.03 |
| Os11t0117400-00 | Rice | nucleus | 17.83 | 16.97 |
| HORVU5Hr1G046430.1 | Barley | nucleus | 20.54 | 16.26 |
| Zm00001d023336_P001 | Maize | nucleus | 17.83 | 16.08 |
| Zm00001d052358_P001 | Maize | nucleus | 18.99 | 16.07 |
| EES09137 | Sorghum | nucleus | 16.67 | 15.87 |
| Zm00001d023332_P001 | Maize | nucleus | 18.99 | 15.12 |
| EES16607 | Sorghum | nucleus | 15.5 | 14.98 |
| Os11t0117600-00 | Rice | nucleus | 8.91 | 14.94 |
| TraesCS5B01G145300.1 | Wheat | nucleus | 18.99 | 14.54 |
| TraesCS5A01G146500.1 | Wheat | nucleus | 18.99 | 14.5 |
| TraesCS5D01G145800.1 | Wheat | nucleus | 18.22 | 14.07 |
| HORVU5Hr1G046390.2 | Barley | nucleus, plastid | 19.77 | 13.67 |
| OQU78673 | Sorghum | nucleus | 12.4 | 13.62 |
| Zm00001d044680_P001 | Maize | nucleus | 18.22 | 13.02 |
| EES15637 | Sorghum | nucleus | 17.05 | 12.9 |
| TraesCS2D01G051500.1 | Wheat | cytosol | 8.14 | 10.88 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078JDN6 | UniProt:A0A078JDN6 | EnsemblPlants:CDY63078 | ProteinID:CDY63078 |
| ProteinID:CDY63078.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00037906001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31282 |
| PANTHER:PTHR31282:SF37 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EDF3A0 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng41380DBnaCnng41380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDN6]
Coordinates
chrLK034242:+:29163..30112
Molecular Weight (calculated)
29812.4 Da
IEP (calculated)
6.554
GRAVY (calculated)
-1.048
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MESCQQKVME KLLHGHGCAS QLKLIMDHHA ESDSSMERED LAKSVLHCFS DALSILIDTN DHNKDDDKSN NSSPQDSSHV LESSRKPFHK RGRKTSMAES
101: SDYRRHESPN PIYHDGFLWR KYGQKQIKES DHQRSYYKCA YTSDQKCEAK KQVQMIQNNP PLYSTTYFGR HTCQLHQAFE TFPIDTSDLQ DSRMIRFDNP
201: DSSTHQHQNQ IIHHKVEQMM PSEKAEEWSS PSEYMSSEVA YAVEAFGFNP ARTSSDLS
101: SDYRRHESPN PIYHDGFLWR KYGQKQIKES DHQRSYYKCA YTSDQKCEAK KQVQMIQNNP PLYSTTYFGR HTCQLHQAFE TFPIDTSDLQ DSRMIRFDNP
201: DSSTHQHQNQ IIHHKVEQMM PSEKAEEWSS PSEYMSSEVA YAVEAFGFNP ARTSSDLS
001: MNSCQQKAME KLLHGHGCAN QLLIMDQTES DSSMEREDLA KSVLHCFSDA LSILIDTNDH QDDQSNNSSP QDSSPVLESS RKPLHKRGRK TSMAESSDYH
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS
Arabidopsis Description
WRKY62WRKY62 [Source:UniProtKB/TrEMBL;Acc:A0A178U8T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.