CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04741
KXG20269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	EES04741	AT4G38130.1	18776063
AT5G01900.1	KXG20269	AT4G38130.1	18776063
AT5G22570.1	EES04741	AT4G38130.1	18776063
AT5G22570.1	KXG20269	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09137	Sorghum	nucleus	57.68	56.83
OQU78673	Sorghum	nucleus	46.07	52.34
Os12t0116600-01	Rice	nucleus	40.07	46.32
Os11t0117400-00	Rice	nucleus	46.82	46.13
OQU78675	Sorghum	nucleus	20.22	25.12
EES09138	Sorghum	nucleus	25.84	23.88
EES09141	Sorghum	nucleus	21.72	21.32
AT1G80590.1	Thale cress	nucleus	18.73	21.28
CDY37614	Canola	nucleus	15.73	21.21
CDY37613	Canola	nucleus	15.73	21.21
Bra008454.1-P	Field mustard	nucleus	15.36	20.71
AT5G01900.1	Thale cress	nucleus	18.73	19.01
AT1G66560.1	Thale cress	nucleus	17.6	18.88
AT1G66600.1	Thale cress	nucleus	16.85	18.67
CDY38684	Canola	nucleus	17.23	17.83
Bra008459.1-P	Field mustard	nucleus	16.85	17.44
CDY71652	Canola	nucleus	16.85	17.44
CDY04820	Canola	nucleus	16.48	16.86
AT1G66550.1	Thale cress	nucleus	15.73	16.54
CDY35701	Canola	nucleus	17.23	16.14
Bra028918.1-P	Field mustard	nucleus	17.23	15.86
Bra002421.1-P	Field mustard	nucleus	16.85	15.62
EES15637	Sorghum	nucleus	19.85	15.54
Bra023211.1-P	Field mustard	nucleus	14.98	15.5
CDY63078	Canola	nucleus	14.98	15.5
CDY12284	Canola	nucleus	14.98	15.5
CDY37611	Canola	nucleus	14.23	15.32
Bra008456.1-P	Field mustard	nucleus	14.23	15.32
CDY26943	Canola	nucleus	16.48	15.28
AT5G22570.1	Thale cress	nucleus	15.73	14.53
Bra020197.1-P	Field mustard	nucleus	14.98	14.29
CDY71866	Canola	nucleus	14.98	14.08
Bra020196.1-P	Field mustard	nucleus	14.98	14.08
CDY09147	Canola	nucleus	14.61	13.98
CDY35694	Canola	nucleus	14.61	12.79

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:C5YRA3	EnsemblPlants:EES16607	ProteinID:EES16607	ProteinID:EES16607.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF31	SMART:SM00774
EnsemblPlantsGene:SORBI_3008G029200	SUPFAM:SSF118290	UniParc:UPI00081AE4D0	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	:

Description

hypothetical protein

Coordinates

chr8:+:2612734..2614762

Molecular Weight (calculated)

30337.6 Da

IEP (calculated)

6.433

GRAVY (calculated)

-0.609

Length

267 amino acids

Sequence
(BLAST)

001: MNILESSTHS GCQVVINEIE HQRALMTDLH DLILPTLDPC SRQDAQQLFQ DIFSSSSKVI SFLQLGDNSK KPANLIKYRR KGGKNNVESH MLGDEAKEIG
101: NKRRKNAQHT GSVMTQAPHF DGYQWRKYGQ KWISKAKHSR SYYRCANSKD QGCLATKTVQ QKESDGSTGT VRLFNVEYYG QHICKKDDII HPYVVETTDY
201: SAPIANYNQS SSSSMFVHND VLGIHDESFE NFFMVPGMPE YLTDFTDFET AEALEVTSMI ISEDIWA

Best Arabidopsis Sequence Match ( AT1G66550.1 )
(BLAST)

001: MVSNIDHKAM EALLRGQGCA NNLKILLENG EISSVSTEPL IHTILDSFSL ALSFMDSPNH PPYHESSSHN MASHMSRRSS KQVQHRRKLC VAEGLVNYNH
101: DSRTMCPNDG FTWRKYGQKT IKASAHKRCY YRCTYAKDQN CNATKRVQKI KDNPPVYRTT YLGKHVCKAF AVHDDTYSST MIRFDQVVPE PIMPQLTTID
201: HQVITVEENS AEHIMNQECD INDYLVDDDP FWASQFPPFP SSDTMFLENI SAFD

Arabidopsis Description

WRKY67Probable WRKY transcription factor 67 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.