CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99914	nucleus
EES06194
EES09137
EES09138
EES09141
EES15637
EES16607
OQU78673
OQU78675

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	EES06194	AT2G45640.1	16429262
AT4G38130.1	EER99914	AT4G32010.1	23362207
AT4G38130.1	EER99914	AT4G32010.1	23362207
AT4G38130.1	EES09137	AT5G01900.1	18776063
AT4G38130.1	EES09138	AT5G01900.1	18776063
AT4G38130.1	EES09141	AT5G01900.1	18776063
AT4G38130.1	EES15637	AT5G01900.1	18776063
AT4G38130.1	EES16607	AT5G01900.1	18776063
AT4G38130.1	OQU78673	AT5G01900.1	18776063
AT4G38130.1	OQU78675	AT5G01900.1	18776063
AT4G38130.1	EES09137	AT5G22570.1	18776063
AT4G38130.1	EES09138	AT5G22570.1	18776063
AT4G38130.1	EES09141	AT5G22570.1	18776063
AT4G38130.1	EES15637	AT5G22570.1	18776063
AT4G38130.1	EES16607	AT5G22570.1	18776063
AT4G38130.1	OQU78673	AT5G22570.1	18776063
AT4G38130.1	OQU78675	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053595_P004	Maize	nucleus	96.52	96.52
Zm00001d016381_P001	Maize	nucleus	73.11	92.65
TraesCS6A01G184100.2	Wheat	nucleus	88.78	88.44
TraesCS6B01G212600.3	Wheat	nucleus	88.59	88.08
HORVU6Hr1G038710.1	Barley	cytosol	87.62	87.45
KXG20269	Sorghum	nucleus	81.43	81.27
TraesCS6D01G171000.1	Wheat	golgi	88.78	79.97
VIT_03s0038g04240.t01	Wine grape	nucleus	77.56	79.88
VIT_14s0006g01820.t01	Wine grape	nucleus	77.18	79.48
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	77.18	78.39
GSMUA_Achr2P19590_001	Banana	nucleus	68.67	78.02
KRH77972	Soybean	nucleus	74.85	77.87
KRH27562	Soybean	nucleus	74.66	77.67
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	76.4	77.45
KRH60609	Soybean	nucleus	74.27	77.26
AT4G38130.1	Thale cress	nucleus	74.85	77.25
GSMUA_Achr5P06320_001	Banana	nucleus	69.05	76.94
Bra040131.1-P	Field mustard	nucleus	74.66	76.89
CDY30008	Canola	nucleus	74.66	76.89
CDY21119	Canola	nucleus	74.47	76.69
KRH51318	Soybean	nucleus	73.69	76.66
GSMUA_AchrUn_...	Banana	cytosol	57.06	74.87
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	55.32	66.36
GSMUA_Achr1P14440_001	Banana	cytosol	52.03	64.66
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	53.58	60.48
EES10729	Sorghum	cytosol	49.52	59.53
OQU87074	Sorghum	cytosol	42.55	44.72
OQU83122	Sorghum	cytosol	27.66	39.94
KXG29820	Sorghum	cytosol	17.41	25.57
EER89968	Sorghum	plastid	17.02	25.14
EES19606	Sorghum	cytosol	17.02	22.56
EES01710	Sorghum	plastid	14.89	17.91
EER97493	Sorghum	plastid	20.7	15.22
OQU88485	Sorghum	nucleus	16.63	13.67

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	EntrezGene:8082952	UniProt:C5XY14	EnsemblPlants:EES04741
ProteinID:EES04741	ProteinID:EES04741.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271
PANTHER:PTHR10625	PANTHER:PTHR10625:SF127	EnsemblPlantsGene:SORBI_3004G091200	SUPFAM:SSF52768	unigene:Sbi.15980	UniParc:UPI0001A85835
InterPro:Ureohydrolase_dom_sf	RefSeq:XP_002451765.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:7759304..7763647

Molecular Weight (calculated)

57888.6 Da

IEP (calculated)

5.256

GRAVY (calculated)

-0.621

Length

517 amino acids

Sequence
(BLAST)

001: MDPSSAGSGG NSLPSVGADG QKRRVCYFYD SDVGNYYYGQ GHPMKPHRIR MTHSLLARYG LLNQMQVYRP NPARDRDLCR FHADDYINFL RSVTPETQQD
101: QIRLLKRFNV GEDCPVFDGL YSFCQTYAGA SVGGAVKLNH GHDIAINWSG GLHHAKKCEA SGFCYVNDIV LAILELLKHH ERVLYVDIDI HHGDGVEEAF
201: YTTDRVMTVS FHKFGDYFPG TGDIRDIGHS KGKYYSLNVP LDDGIDDESY QSLFKPIMGK VMEVFRPGAV VLQCGADSLS GDRLGCFNLS IRGHAECVRY
301: MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQELEDK MPVNEYYEYF GPDYTLHVAP SNMENKNTRN QLDDIRSKLL DNLSKLRHAP SVQFQERVPD
401: TEVPEPDEDQ DDPDERHDPD SDMEVDDHKA VEESARRSIP GIKVKREFGE NETKVQDGGR IASDHRGVEP MAEDIGSSKQ APQADASAMA VDEPSNVKNE
501: PESSTKLQDQ AAAYHKP

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.