Factsheet for HORVU6Hr1G038710.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G003310.1
HORVU2Hr1G017760.4	nucleus
HORVU2Hr1G098280.1
HORVU5Hr1G046390.2
HORVU5Hr1G046430.1
HORVU6Hr1G012050.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	HORVU6Hr1G012050.4	AT2G45640.1	16429262
AT4G38130.1	HORVU2Hr1G017760.4	AT4G32010.1	23362207
AT4G38130.1	HORVU2Hr1G017760.4	AT4G32010.1	23362207
AT4G38130.1	HORVU2Hr1G003310.1	AT5G01900.1	18776063
AT4G38130.1	HORVU2Hr1G098280.1	AT5G01900.1	18776063
AT4G38130.1	HORVU5Hr1G046390.2	AT5G01900.1	18776063
AT4G38130.1	HORVU5Hr1G046430.1	AT5G01900.1	18776063
AT4G38130.1	HORVU2Hr1G003310.1	AT5G22570.1	18776063
AT4G38130.1	HORVU2Hr1G098280.1	AT5G22570.1	18776063
AT4G38130.1	HORVU5Hr1G046390.2	AT5G22570.1	18776063
AT4G38130.1	HORVU5Hr1G046430.1	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G184100.2	Wheat	nucleus	96.91	96.72
TraesCS6B01G212600.3	Wheat	nucleus	96.72	96.35
Zm00001d016381_P001	Maize	nucleus	69.31	87.99
EES04741	Sorghum	nucleus	87.45	87.62
TraesCS6D01G171000.1	Wheat	golgi	96.53	87.11
Zm00001d053595_P004	Maize	nucleus	86.29	86.46
HORVU7Hr1G085870.2	Barley	nucleus	82.24	82.08
VIT_03s0038g04240.t01	Wine grape	nucleus	76.83	79.28
VIT_14s0006g01820.t01	Wine grape	nucleus	76.25	78.69
GSMUA_Achr2P19590_001	Banana	nucleus	67.95	77.36
KRH60609	Soybean	nucleus	73.94	77.06
KRH27562	Soybean	nucleus	73.94	77.06
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	75.68	77.01
KRH77972	Soybean	nucleus	73.75	76.86
AT4G38130.1	Thale cress	nucleus	74.32	76.85
GSMUA_Achr5P06320_001	Banana	nucleus	68.73	76.72
Bra040131.1-P	Field mustard	nucleus	74.32	76.69
CDY30008	Canola	nucleus	74.32	76.69
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	75.48	76.67
KRH51318	Soybean	nucleus	73.55	76.66
CDY21119	Canola	nucleus	74.13	76.49
GSMUA_AchrUn_...	Banana	cytosol	55.6	73.1
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	54.44	65.43
GSMUA_Achr1P14440_001	Banana	cytosol	50.77	63.22
HORVU6Hr1G038010.6	Barley	cytosol	53.09	59.91
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	25.29	52.82
HORVU4Hr1G044060.1	Barley	cytosol	41.12	52.46
HORVU2Hr1G072570.5	Barley	plastid	25.87	47.69
HORVU5Hr1G077800.1	Barley	cytosol	43.82	46.9
HORVU5Hr1G077760.1	Barley	cytosol	44.02	46.25
HORVU1Hr1G074110.1	Barley	cytosol	16.6	22.11
HORVU0Hr1G021740.4	Barley	cytosol	3.28	22.08
HORVU1Hr1G066760.1	Barley	plastid	17.57	20.78
HORVU0Hr1G021730.1	Barley	cytosol	4.25	18.33
HORVU5Hr1G037920.1	Barley	cytosol	15.44	17.7
HORVU2Hr1G032540.2	Barley	plastid	21.04	14.87
HORVU5Hr1G017550.9	Barley	nucleus	16.99	14.33

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	UniProt:A0A287TZG9	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:HORVU6Hr1G038710	EnsemblPlants:HORVU6Hr1G038710.1
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF127	SUPFAM:SSF52768
UniParc:UPI000B482249	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A287TZG9]

Coordinates

chrchr6H:-:198579213..198588313

Molecular Weight (calculated)

57613.5 Da

IEP (calculated)

5.032

GRAVY (calculated)

-0.593

Length

518 amino acids

Sequence
(BLAST)

001: MEPSSAXXXX NSLPSVGPDG QKRRVCYFYD PEVGNYYYGQ GHPMKPHRIR MTHSLLAQYG LLDQMQVLRP NPARDRDLCR FHADDYISFL RSVTPETQQD
101: QIRALKRFNV GEDCPVFDGL YSFCQTYAGA SVGGAVKLNH GLDIAINWSG GLHHAKKCEA SGFCYVNDIV LAILELLKHH QRVLYVDIDI HHGDGVEEAF
201: YTTDRVMTVS FHKFGDYFPG TGDVRDIGHS KGKYYSLNVP LDDGIDDESY QSLFKPIMAK VMEVFQPGAV VLQCGADSLS GDRLGCFNLS IRGHAECVKY
301: MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQELEDK MPVNEYYEYF GPDYTLHVAP SNMENKNTHY ELDNIRSKLL DNLSKLRHAP SVQFQERPPD
401: TEFPEPDEDE EDQDERHDGP DSDMEMDYHT PLEDSARRIT IQGARVKRES AGAETKDQDG SRVTGEHRGP EPMAEDIGPS KQAHLDANAM AVDEPGNVKI
501: ESGSSSKLPD PPAIYQKP

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.