Factsheet for HORVU7Hr1G085870.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G003310.1
HORVU2Hr1G017760.4	nucleus
HORVU2Hr1G098280.1
HORVU5Hr1G046390.2
HORVU5Hr1G046430.1
HORVU6Hr1G012050.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	HORVU6Hr1G012050.4	AT2G45640.1	16429262
AT4G38130.1	HORVU2Hr1G017760.4	AT4G32010.1	23362207
AT4G38130.1	HORVU2Hr1G017760.4	AT4G32010.1	23362207
AT4G38130.1	HORVU2Hr1G003310.1	AT5G01900.1	18776063
AT4G38130.1	HORVU2Hr1G098280.1	AT5G01900.1	18776063
AT4G38130.1	HORVU5Hr1G046390.2	AT5G01900.1	18776063
AT4G38130.1	HORVU5Hr1G046430.1	AT5G01900.1	18776063
AT4G38130.1	HORVU2Hr1G003310.1	AT5G22570.1	18776063
AT4G38130.1	HORVU2Hr1G098280.1	AT5G22570.1	18776063
AT4G38130.1	HORVU5Hr1G046390.2	AT5G22570.1	18776063
AT4G38130.1	HORVU5Hr1G046430.1	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G356800.1	Wheat	nucleus	98.07	98.07
TraesCS7B01G261800.1	Wheat	nucleus	98.07	98.07
TraesCS7A01G365600.3	Wheat	nucleus	97.69	96.94
Os06t0583400-01	Rice	nucleus	89.98	90.15
KXG20269	Sorghum	nucleus	88.25	88.42
Zm00001d046388_P001	Maize	nucleus	84.39	82.49
HORVU6Hr1G038710.1	Barley	cytosol	82.08	82.24
VIT_14s0006g01820.t01	Wine grape	nucleus	76.88	79.48
VIT_03s0038g04240.t01	Wine grape	nucleus	76.3	78.88
AT4G38130.1	Thale cress	nucleus	75.14	77.84
Bra040131.1-P	Field mustard	nucleus	74.76	77.29
CDY30008	Canola	nucleus	74.76	77.29
Solyc09g091440.2.1	Tomato	nucleus	73.99	77.11
CDY21119	Canola	nucleus	74.57	77.09
KRH27562	Soybean	nucleus	73.6	76.86
KRH77972	Soybean	nucleus	73.41	76.66
KRH60609	Soybean	nucleus	72.83	76.06
GSMUA_Achr5P06320_001	Banana	nucleus	67.82	75.86
GSMUA_Achr2P19590_001	Banana	nucleus	66.28	75.6
KRH51318	Soybean	nucleus	72.06	75.25
GSMUA_AchrUn_...	Banana	cytosol	54.72	72.08
PGSC0003DMT400076252	Potato	nucleus	73.8	71.46
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	53.95	64.97
GSMUA_Achr1P14440_001	Banana	cytosol	49.13	61.3
HORVU6Hr1G038010.6	Barley	cytosol	52.99	59.91
HORVU4Hr1G044060.1	Barley	cytosol	41.04	52.46
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	24.66	51.61
HORVU2Hr1G072570.5	Barley	plastid	26.78	49.47
HORVU5Hr1G077800.1	Barley	cytosol	43.93	47.11
HORVU5Hr1G077760.1	Barley	cytosol	43.93	46.25
HORVU1Hr1G074110.1	Barley	cytosol	15.99	21.34
HORVU0Hr1G021740.4	Barley	cytosol	3.08	20.78
HORVU1Hr1G066760.1	Barley	plastid	17.53	20.78
HORVU0Hr1G021730.1	Barley	cytosol	4.05	17.5
HORVU5Hr1G037920.1	Barley	cytosol	15.22	17.48
HORVU2Hr1G032540.2	Barley	plastid	21.77	15.42
HORVU5Hr1G017550.9	Barley	nucleus	17.15	14.5

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	UniProt:A0A287X6A3	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:HORVU7Hr1G085870	EnsemblPlants:HORVU7Hr1G085870.2
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF127	SUPFAM:SSF52768
UniParc:UPI000B4883F7	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A287X6A3]

Coordinates

chrchr7H:+:519713858..519726071

Molecular Weight (calculated)

57961.8 Da

IEP (calculated)

5.436

GRAVY (calculated)

-0.603

Length

519 amino acids

Sequence
(BLAST)

001: MDISAGGGGN SLPTTGADGS KRRVCYFYDA EVGNYYYGQG HPMKPHRIRM THALLAHYGL LDEMQVLKPH PARDRDLCRF HADDYVSFLR SVTPETQQDQ
101: IRALKRFNVG EDCPVFDGLY SFCQTYAGGS VGGAVKLNHG HDIAINWAGG LHHAKKCEAS GFCYVNDIVL AILELLKYHQ RVLYVDIDIH HGDGVEEAFY
201: TTDRVMTVSF HKFGDYFPGT GDIRDVGHSK GKYYSLNVPL DDGIDDESYQ SLFKPIMAKV MEIFRPGAVV LQCGADSLSG DRLGCFNLSI KGHAECVRFM
301: RSFNVPVLLL GGGGYTIRNV ARCWCYETGV ALGHELTDKM PLNEYYEYFG PDYTLHVAPS NMENKNTHRQ LDEIRSRLLE NLTKLRHAPS VQFQERPPEA
401: EQPEQDEDQE NPDERHHADS DVEMDDAKPL EDSERRSSIQ SARVKRESAE TEVTKDQDGN GGASEQARAT EPVADGVGSS KQNPPIDASS MAIDEPAVVR
501: AEPERSNKLQ EQQALHQKP

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.