Factsheet for Zm00001d046388_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005056_P001
Zm00001d007173_P003	nucleus
Zm00001d015058_P002
Zm00001d022440_P005	nucleus
Zm00001d023332_P001
Zm00001d023336_P001
Zm00001d029836_P001	nucleus
Zm00001d037893_P001	nucleus
Zm00001d038148_P001	nucleus
Zm00001d044680_P001
Zm00001d044682_P001
Zm00001d045970_P001	nucleus
Zm00001d052358_P001
Zm00001d053919_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	Zm00001d015058_P002	AT2G45640.1	16429262
AT4G38130.1	Zm00001d053919_P001	AT2G45640.1	16429262
AT4G38130.1	Zm00001d007173_P003	AT4G32010.1	23362207
AT4G38130.1	Zm00001d022440_P005	AT4G32010.1	23362207
AT4G38130.1	Zm00001d029836_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d037893_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d038148_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d045970_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d007173_P003	AT4G32010.1	23362207
AT4G38130.1	Zm00001d022440_P005	AT4G32010.1	23362207
AT4G38130.1	Zm00001d029836_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d037893_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d038148_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d045970_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d005056_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d023332_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d023336_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d044680_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d044682_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d052358_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d005056_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d023332_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d023336_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d044680_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d044682_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d052358_P001	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	16.95	92.78
KXG20269	Sorghum	nucleus	87.95	90.15
Os06t0583400-01	Rice	nucleus	83.99	86.1
Zm00001d016381_P001	Maize	nucleus	66.1	86.03
TraesCS7B01G261800.1	Wheat	nucleus	83.05	84.97
TraesCS7D01G356800.1	Wheat	nucleus	82.67	84.59
HORVU7Hr1G085870.2	Barley	nucleus	82.49	84.39
TraesCS7A01G365600.3	Wheat	nucleus	82.49	83.75
Zm00001d053595_P004	Maize	nucleus	77.02	79.11
VIT_14s0006g01820.t01	Wine grape	nucleus	71.94	76.1
VIT_03s0038g04240.t01	Wine grape	nucleus	71.75	75.9
Solyc09g091440.2.1	Tomato	nucleus	70.62	75.3
KRH27562	Soybean	nucleus	69.87	74.65
KRH77972	Soybean	nucleus	69.87	74.65
KRH60609	Soybean	nucleus	69.11	73.84
Bra040131.1-P	Field mustard	nucleus	69.49	73.51
AT4G38130.1	Thale cress	nucleus	69.3	73.45
KRH51318	Soybean	nucleus	68.74	73.44
GSMUA_AchrUn_...	Banana	cytosol	54.43	73.35
CDY21119	Canola	nucleus	69.3	73.31
CDY30008	Canola	nucleus	69.3	73.31
GSMUA_Achr5P06320_001	Banana	nucleus	62.52	71.55
GSMUA_Achr2P19590_001	Banana	nucleus	61.21	71.43
PGSC0003DMT400076252	Potato	nucleus	70.24	69.59
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	54.43	67.05
Zm00001d039202_P001	Maize	nucleus	19.77	63.25
GSMUA_Achr1P14440_001	Banana	cytosol	49.53	63.22
Zm00001d018346_P001	Maize	mitochondrion	23.92	57.47
Zm00001d050139_P001	Maize	nucleus	52.73	57.03
Zm00001d003813_P001	Maize	cytosol	46.89	55.7
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	14.88	40.31
Zm00001d042974_P001	Maize	mitochondrion	9.79	24.19
Zm00001d046348_P003	Maize	plastid	17.14	23.88
Zm00001d006780_P011	Maize	cytosol	19.77	14.91
Zm00001d010152_P002	Maize	cytosol	15.44	14.56
Zm00001d010162_P002	Maize	cytosol	15.44	14.56
Zm00001d018864_P002	Maize	nucleus	16.38	14.05

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	UniProt:A0A1D6P2G5	ProteinID:AQL04201.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse
InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913
PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF127	SUPFAM:SSF52768	UniParc:UPI000844328F
InterPro:Ureohydrolase_dom_sf	EnsemblPlantsGene:Zm00001d046388	EnsemblPlants:Zm00001d046388_P001	EnsemblPlants:Zm00001d046388_T001	:	:

Description

Histone deacetylase

Coordinates

chr9:-:86625253..86638592

Molecular Weight (calculated)

59122.5 Da

IEP (calculated)

6.126

GRAVY (calculated)

-0.427

Length

531 amino acids

Sequence
(BLAST)

001: MDASAGGGGN SLPTTGADGS KRRVCYFYDA EVGNYYYGQG HPMKPHRIRM THALLGRYGL LDQMQVFRPH PARDRDLCRF HADDYVSFLR SVTPETQQDQ
101: IRALKRFNVG EDCPVFDGLY SFCQTYAGGS VGGAVKLNHG HDIAINWAGG LHHAKKCEAS GFCYVNDIVL AILELLKYHQ RVLYVDIDIH HGDGVEEAFY
201: TTDRVMTVSF HKFGDYFPGT GDIRDVGHSK GKYYSLNVPL DDGIDDESYQ SLFKPIMGKV MEVFNPGAVV LQCGADSLSG DRLGCFNLSI KGHAECVRFM
301: RSFNVPLLLL GGGGYTIRNV ARCWCYEVCI PYGENTHLLC LSSFHFSVVC YSINSNKPCV LSEVIYRHRT TGVALGHELT DKMPPNEYYE YFGPDYTLHV
401: APSNMENKNT RHQLDDIKSK LLDNLSKLRH APSVQFQERP PEAELPEQDE DKENPDERHD ADSDVEMNDA KPLQDSGRCC SVRCVHVDVN SVAAEHSRGT
501: GPVADGVGSS KQTFPNATSR MAIDEPNALE S

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.