Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005056_P001 | |
| Zm00001d007173_P003 | nucleus |
| Zm00001d015058_P002 | |
| Zm00001d022440_P005 | nucleus |
| Zm00001d023332_P001 | |
| Zm00001d023336_P001 | |
| Zm00001d029836_P001 | nucleus |
| Zm00001d037893_P001 | nucleus |
| Zm00001d038148_P001 | nucleus |
| Zm00001d044680_P001 | |
| Zm00001d044682_P001 | |
| Zm00001d045970_P001 | nucleus |
| Zm00001d052358_P001 | |
| Zm00001d053919_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014076_P001 | Maize | cytosol, mitochondrion, nucleus | 49.4 | 84.54 |
| Zm00001d018346_P001 | Maize | mitochondrion | 86.14 | 64.71 |
| Zm00001d016381_P001 | Maize | nucleus | 50.6 | 20.59 |
| Zm00001d046388_P001 | Maize | nucleus | 63.25 | 19.77 |
| Zm00001d024221_P001 | Maize | cytosol, nucleus, plastid, vacuole | 21.69 | 18.37 |
| AT4G38130.1 | Thale cress | nucleus | 53.61 | 17.76 |
| Bra040131.1-P | Field mustard | nucleus | 53.61 | 17.73 |
| CDY21119 | Canola | nucleus | 53.61 | 17.73 |
| CDY30008 | Canola | nucleus | 53.61 | 17.73 |
| Zm00001d053595_P004 | Maize | nucleus | 54.82 | 17.6 |
| VIT_03s0038g04240.t01 | Wine grape | nucleus | 53.01 | 17.53 |
| VIT_14s0006g01820.t01 | Wine grape | nucleus | 53.01 | 17.53 |
| KRH60609 | Soybean | nucleus | 51.81 | 17.3 |
| KRH51318 | Soybean | nucleus | 51.81 | 17.3 |
| KRH77972 | Soybean | nucleus | 50.0 | 16.7 |
| KRH27562 | Soybean | nucleus | 50.0 | 16.7 |
| Os02t0215200-02 | Rice | cytoskeleton, cytosol, nucleus | 51.2 | 16.7 |
| Os02t0214900-01 | Rice | cytoskeleton, cytosol, nucleus | 47.59 | 15.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 33.73 | 14.21 |
| GSMUA_Achr5P06320_001 | Banana | nucleus | 37.35 | 13.36 |
| GSMUA_Achr8P04190_001 | Banana | cytosol, nucleus, plasma membrane | 34.34 | 13.23 |
| Zm00001d050139_P001 | Maize | nucleus | 37.95 | 12.83 |
| GSMUA_Achr2P19590_001 | Banana | nucleus | 34.34 | 12.53 |
| GSMUA_Achr1P14440_001 | Banana | cytosol | 30.12 | 12.02 |
| Zm00001d003813_P001 | Maize | cytosol | 25.9 | 9.62 |
| Zm00001d046348_P003 | Maize | plastid | 15.06 | 6.56 |
| Zm00001d018864_P002 | Maize | nucleus | 12.65 | 3.39 |
| Zm00001d010162_P002 | Maize | cytosol | 10.84 | 3.2 |
| Zm00001d010152_P002 | Maize | cytosol | 10.84 | 3.2 |
| Zm00001d006780_P011 | Maize | cytosol | 10.84 | 2.56 |
| Zm00001d042974_P001 | Maize | mitochondrion | 1.2 | 0.93 |
Protein Annotations
| Gene3D:3.40.800.20 | MapMan:35.1 | UniProt:A0A1D6MEF2 | ProteinID:AQK89024.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004407 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | PFAM:PF00850 | PRINTS:PR01271 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF127 |
| SUPFAM:SSF52768 | UniParc:UPI000842733B | InterPro:Ureohydrolase_dom_sf | EnsemblPlantsGene:Zm00001d039202 | EnsemblPlants:Zm00001d039202_P001 | EnsemblPlants:Zm00001d039202_T001 |
Description
Histone deacetylase 19
Coordinates
chr6:-:172440748..172442029
Molecular Weight (calculated)
18908.8 Da
IEP (calculated)
9.075
GRAVY (calculated)
-0.501
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMMRGKKGY GDVGMEWKQR AVNGCKVGAR APTDTPSVVL CGGGNSLPTT GADGSKRRVC YFYDVEVGNC YYEHCHPMKP HRIRMTHALL GRYGLLDQMQ
101: VFRPHPARDR DLCRFHADDY VSFLRSVTPE TQQDQIRALK HFSVGEDCPR LRRSLQFLPN EISIFL
101: VFRPHPARDR DLCRFHADDY VSFLRSVTPE TQQDQIRALK HFSVGEDCPR LRRSLQFLPN EISIFL
001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T
Arabidopsis Description
HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.