Factsheet for Zm00001d006780_P011

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97493	Sorghum	plastid	91.19	91.32
Os07t0602200-01	Rice	cytosol, nucleus, plastid	77.56	78.56
TraesCS1B01G329500.1	Wheat	cytosol	42.76	77.18
TraesCS1A01G317100.1	Wheat	mitochondrion	43.18	76.57
TraesCS1D01G317100.1	Wheat	mitochondrion	42.33	75.63
TraesCS2A01G177100.1	Wheat	cytosol	73.15	74.31
TraesCS2D01G185200.1	Wheat	cytosol, golgi	72.44	73.59
TraesCS2B01G204100.1	Wheat	cytosol	72.16	73.3
HORVU1Hr1G066760.1	Barley	plastid	44.18	71.0
HORVU2Hr1G032540.2	Barley	plastid	73.58	70.67
GSMUA_Achr4P03250_001	Banana	cytosol	57.24	60.69
VIT_17s0000g07280.t01	Wine grape	cytosol	53.55	58.36
KRH56821	Soybean	nucleus	53.41	57.32
Bra012984.1-P	Field mustard	nucleus	52.27	56.88
Bra035942.1-P	Field mustard	peroxisome	52.41	56.77
CDY16823	Canola	peroxisome	52.27	56.62
CDY23088	Canola	nucleus	51.85	56.41
CDX87200	Canola	peroxisome	52.13	56.03
KRH03123	Soybean	cytosol	51.99	55.79
CDY02173	Canola	nucleus	51.56	55.76
Solyc03g115150.2.1	Tomato	cytosol	50.71	55.18
AT5G61060.2	Thale cress	cytosol	51.99	55.12
Bra029339.1-P	Field mustard	cytosol	34.66	50.73
CDY42846	Canola	nucleus	33.81	46.03
CDY47012	Canola	cytosol	25.28	41.59
Zm00001d042974_P001	Maize	mitochondrion	12.22	40.0
AT5G61070.1	Thale cress	cytosol	38.21	39.44
Zm00001d018864_P002	Maize	nucleus	23.15	26.33
Zm00001d016381_P001	Maize	nucleus	13.49	23.28
Zm00001d010152_P002	Maize	cytosol	17.61	22.02
Zm00001d010162_P002	Maize	cytosol	17.61	22.02
Zm00001d050139_P001	Maize	nucleus	14.91	21.38
Zm00001d053595_P004	Maize	nucleus	15.06	20.5
Zm00001d003813_P001	Maize	cytosol	12.78	20.13
Zm00001d046388_P001	Maize	nucleus	14.91	19.77
Zm00001d046348_P003	Maize	plastid	10.09	18.64
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	4.26	15.31
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	1.99	14.43
Zm00001d018346_P001	Maize	mitochondrion	3.98	12.67
Zm00001d039202_P001	Maize	nucleus	2.56	10.84

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.10.490.10	Gene3D:3.40.800.20	EntrezGene:541883	UniProt:A0A1D6F0N8	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	ProteinID:ONM25057.1	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625
PANTHER:PTHR10625:SF177	SUPFAM:SSF52768	UniParc:UPI000844C6E7	InterPro:Ureohydrolase_dom_sf	EnsemblPlantsGene:Zm00001d006780	EnsemblPlants:Zm00001d006780_P011
EnsemblPlants:Zm00001d006780_T011	SEG:seg	:	:	:	:

Description

histone deacetylase histone deacetylase

Coordinates

chr2:+:216491850..216503305

Molecular Weight (calculated)

77011.6 Da

IEP (calculated)

5.717

GRAVY (calculated)

-0.155

Length

704 amino acids

Sequence
(BLAST)

001: MAEPAPAPPV TAPLVGLLYD ERMCAHATPN GEEHPENPER LRSIWRKLNA AGVASRCVAL KAKEAEDKYI ASVHSKRHIK LMKEISSTIY DASRNKIARK
101: FNSIYLNKGS SESAVLAAGS VIEVILHVAE KVAAGELSSA IALVRPPGHH AEHDEAMGFC LFNNVAVAAN YLLNERPDLG IKKILIVDWD VHHGNGTQKM
201: FYDDPRVLFF SVHRFDYGSF YPSEGDASHC FIGEEAGKGY NINVPWEHGK CGDADYIAAW DHVLLPVTKV FDPDIILVSA GFDAALGDPL GGCCITPNGY
301: ALLLTKLLGF AQGRIVMALE GGYNLRSIAN SVCACAKVLL GDKFTFNTPE MQPFESTWRV IQAVRNELKT CWPVLSSKLP ENVSLRIKPA PSELYASDSE
401: SDSEDVDELL GTVASVSVIE ATGVAISEHL SKMKLDDDSL AVKTNSSCSA AEQHPVDSVK VHNNASVVLT KKISDLSLEW RSDLSKTDVW YASFGSNMWR
501: PRFLCYIQGG KAEGMNIPCC GSRDTSSPKG TVWKTVPHRL LFGRSSTPCW GTGGVAFLNP EINYNEKSYV CMYKITLEQF NDILFQENRL VLEDGKDGNT
601: VYPDSPLIGS SEIKFISTNR AVHLEPIKDS WYSNVLYLGN EDEVPILTMT CPASDIERYK SGELRLAPPS ETYAATLIKG LVEGKQMDAD GAASYINAAA
701: ARAL

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.