Factsheet for Bra035942.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 4
peroxisome 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16823	Canola	peroxisome	99.69	99.69
CDX87200	Canola	peroxisome	96.92	96.18
Bra012984.1-P	Field mustard	nucleus	81.23	81.61
VIT_17s0000g07280.t01	Wine grape	cytosol	62.77	63.16
KRH56821	Soybean	nucleus	61.85	61.28
Bra029339.1-P	Field mustard	cytosol	44.31	59.88
KRH03123	Soybean	cytosol	59.85	59.3
Solyc03g115150.2.1	Tomato	cytosol	57.54	57.81
GSMUA_Achr4P03250_001	Banana	cytosol	58.92	57.68
TraesCS1A01G317100.1	Wheat	mitochondrion	33.38	54.66
TraesCS1B01G329500.1	Wheat	cytosol	32.46	54.1
TraesCS1D01G317100.1	Wheat	mitochondrion	32.62	53.81
Zm00001d006780_P011	Maize	cytosol	56.77	52.41
Os07t0602200-01	Rice	cytosol, nucleus, plastid	55.69	52.09
EER97493	Sorghum	plastid	56.15	51.92
TraesCS2A01G177100.1	Wheat	cytosol	54.15	50.79
TraesCS2D01G185200.1	Wheat	cytosol, golgi	53.69	50.36
TraesCS2B01G204100.1	Wheat	cytosol	53.69	50.36
HORVU1Hr1G066760.1	Barley	plastid	33.38	49.54
HORVU2Hr1G032540.2	Barley	plastid	55.38	49.11
AT5G61070.1	Thale cress	cytosol	51.38	48.97
Bra001708.1-P	Field mustard	nucleus	21.08	32.85
Bra022329.1-P	Field mustard	nucleus	24.62	28.07
Bra031628.1-P	Field mustard	cytosol	16.31	27.46
Bra011444.1-P	Field mustard	golgi, vacuole	17.23	24.94
Bra040131.1-P	Field mustard	nucleus	16.92	21.91
Bra019424.1-P	Field mustard	cytosol	13.54	20.66
Bra035858.1-P	Field mustard	nucleus	14.62	20.21
Bra018073.1-P	Field mustard	cytosol	12.15	19.8
Bra019516.1-P	Field mustard	cytosol	12.0	19.45
Bra018072.1-P	Field mustard	cytosol	12.31	18.1
Bra009877.1-P	Field mustard	cytosol	9.69	18.05
Bra038607.1-P	Field mustard	cytosol	14.77	16.84

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra035942	EnsemblPlants:Bra035942.1	EnsemblPlants:Bra035942.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0010053	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0030154	GO:GO:0032041	GO:GO:0045604	GO:GO:0070932	InterPro:His_deacetylse
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M4F4E2	PFAM:PF00850	PRINTS:PR01270
PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	SUPFAM:SSF52768	UniParc:UPI0002541FBB	InterPro:Ureohydrolase_dom_sf	SEG:seg

Description

AT5G61060 (E=2e-302) HDA05, HDA5, ATHDA5 | HDA05 (HISTONE DEACETYLASE 5); histone deacetylase

Coordinates

chrA09:-:2808000..2811477

Molecular Weight (calculated)

71248.5 Da

IEP (calculated)

5.213

GRAVY (calculated)

-0.250

Length

650 amino acids

Sequence
(BLAST)

001: MPEKPSESNG KVHRKVGLVY DETMCKHDTP DGEAHPERPD RIRVIWEKLQ LAGVTQRCVV LGGTKAEDAH LQLVHTKDHV NLVKSSTNKK DYQSDRVASL
101: VNSIYLNGST SEAAYLAAGS VVEVAEKVAK GELDSGFAIV RPPGHHAEAD EAMGFCFFNN VAVAASYLLD ERPDLGVKKI LVVDWDVHHG NGTQKMFWED
201: PRVLVFSVHR HEDGGFYPGG DDGSYNMVGE GPGEGFNINV PWEQGRCGDA DYLAAWDHIL IPVAKEFNPD IILLSAGFDA AIGDPLGGCR VTPYGYSVML
301: KKLMEFAQGK IVMALEGGYN LDSIAKSSLA CVQVLLEDNP IQGSSEAIPF MSTWRVIQAV RKRLCAYWPS LADELPSKLT NQKTPTPIVL TSNSNSEAKD
401: NAHELLDQMS KLNIENHQGD TKVSRSWRSD LSKVDVWYAS FGSNMWKPRF LCYIQGGQVE GMTKPCVGSM DKSPPKGITW GTYPNRLFFG RESTNVWGKG
501: GVAFTNPLTN PNDQTHMCLY RITLEQFNDV LFQENGLNVD FASPIFGLTA LQLVEKNGST PLEAALAPWY GNVVCLGREG DVPILTMTCT LSVIEKFASG
601: EVPLSPPAKA YANTLIRGLV EGGIFSEEEA EAYIDNAASK PLYINGASRF

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.