Factsheet for GSMUA_Achr4P03250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07280.t01	Wine grape	cytosol	61.9	63.62
TraesCS1A01G317100.1	Wheat	mitochondrion	37.05	61.96
TraesCS1B01G329500.1	Wheat	cytosol	35.69	60.77
TraesCS1D01G317100.1	Wheat	mitochondrion	35.99	60.66
Bra012984.1-P	Field mustard	nucleus	59.04	60.59
KRH56821	Soybean	nucleus	59.79	60.52
Os07t0602200-01	Rice	cytosol, nucleus, plastid	62.95	60.14
CDY02173	Canola	nucleus	58.58	59.75
CDY23088	Canola	nucleus	58.13	59.66
Bra035942.1-P	Field mustard	peroxisome	57.68	58.92
CDY16823	Canola	peroxisome	57.53	58.77
CDX87200	Canola	peroxisome	57.68	58.47
AT5G61060.2	Thale cress	cytosol	58.43	58.43
TraesCS2A01G177100.1	Wheat	cytosol	60.84	58.3
TraesCS2D01G185200.1	Wheat	cytosol, golgi	60.24	57.72
TraesCS2B01G204100.1	Wheat	cytosol	60.24	57.72
EER97493	Sorghum	plastid	60.99	57.61
Solyc03g115150.2.1	Tomato	cytosol	55.87	57.34
Zm00001d006780_P011	Maize	cytosol	60.69	57.24
KRH03123	Soybean	cytosol	56.48	57.16
HORVU1Hr1G066760.1	Barley	plastid	37.05	56.16
HORVU2Hr1G032540.2	Barley	plastid	61.45	55.66
Bra029339.1-P	Field mustard	cytosol	38.1	52.6
CDY42846	Canola	nucleus	38.7	49.71
CDY47012	Canola	cytosol	27.11	42.06
AT5G61070.1	Thale cress	cytosol	42.17	41.06
GSMUA_AchrUn_...	Banana	cytosol	18.22	27.31
GSMUA_Achr6P19520_001	Banana	cytosol	15.66	26.94
GSMUA_Achr8P20260_001	Banana	nucleus	23.8	24.96
GSMUA_AchrUn_...	Banana	cytosol	14.31	24.11
GSMUA_Achr2P06520_001	Banana	cytosol	12.8	23.35
GSMUA_AchrUn_...	Banana	mitochondrion	12.5	22.93
GSMUA_Achr1P14440_001	Banana	cytosol	14.31	22.84
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	14.76	22.74
GSMUA_Achr2P19590_001	Banana	nucleus	14.46	21.1
GSMUA_Achr5P06320_001	Banana	nucleus	14.61	20.91
GSMUA_Achr6P17260_001	Banana	plastid	14.76	20.42
GSMUA_Achr7P09060_001	Banana	mitochondrion	1.51	19.23
GSMUA_Achr10P...	Banana	plastid	10.09	15.26
GSMUA_Achr7P09050_001	Banana	cytosol	6.02	14.23

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0070932	EnsemblPlantsGene:GSMUA_Achr4G03250_001	EnsemblPlants:GSMUA_Achr4P03250_001	EnsemblPlants:GSMUA_Achr4T03250_001	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M0SKP2	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625
PANTHER:PTHR10625:SF177	SUPFAM:SSF52768	UniParc:UPI000296535F	InterPro:Ureohydrolase_dom_sf	:	:

Description

Histone deacetylase 5 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03250_001]

Coordinates

chr4:-:2619556..2629676

Molecular Weight (calculated)

73893.2 Da

IEP (calculated)

5.111

GRAVY (calculated)

-0.170

Length

664 amino acids

Sequence
(BLAST)

001: MAASPDDSLR PRVGLIYDER MCRHTTPDGE AHPECPERIR AIWKKLESEG IPRRCVLLNA RKVEDKYLAS VHTQNHIELI KNISSKEFDS RRQKIASELD
101: SIYLNVGSSE AAYLAAGSVI EASEKVAKGD LNSVIAIVRP PGHHAESNEA MGFCLFNNVA IAANYLLNEK PELGIKKILI VDWDVHHGNG TQKMFYKDPR
201: VLFFSVHRFD FGDFYPSGDD GAYCMIGEGP GAGYNINVPW EHGQCSDADY IAVWDHVLIP IAKEYNPDII LVSAGFDAAI DDPLGGCCVT PHGYSLLLQK
301: LMQFAQGKIV MVLEGGYNLK SIANSVLACA KVLLQEESVG SIQTATFKST WRVIEAVRHE LKGYWPVLDV ELPQNLLITN SRPCPAEVTY SSSESDVEND
401: EGTARTINFS DFVEDDVLLP LSKLKIDEEL VTSNEIVDGY ITWRSLLSKV EVWYASFGSN MWMPRFLCYI EGGKVEGMSA PCCGSLDKSS PKDVIWKIVP
501: HRLLFGRSHT RTWGAGGVAF LDPERSTSDK AYLCMYRITL EQFNDVLLQE NSLHQENGII KQMASPLLDL HILEYVAKNK SLPLKTLKDG WYSTVLYLGK
601: EDDLPILTMT CSASDVERFK SGELPASVPA KDYMNTLVNG LVEGKQLTRE EAVAYVNGAA TWKL

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.