Factsheet for Bra012984.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23088	Canola	nucleus	97.22	97.22
CDY02173	Canola	nucleus	96.91	96.31
AT5G61060.2	Thale cress	cytosol	85.63	83.43
Bra035942.1-P	Field mustard	peroxisome	81.61	81.23
VIT_17s0000g07280.t01	Wine grape	cytosol	64.45	64.55
KRH56821	Soybean	nucleus	64.3	63.41
KRH03123	Soybean	cytosol	62.44	61.59
Bra029339.1-P	Field mustard	cytosol	45.6	61.33
GSMUA_Achr4P03250_001	Banana	cytosol	60.59	59.04
Solyc03g115150.2.1	Tomato	cytosol	58.27	58.27
TraesCS1A01G317100.1	Wheat	mitochondrion	34.47	56.17
TraesCS1B01G329500.1	Wheat	cytosol	33.54	55.64
TraesCS1D01G317100.1	Wheat	mitochondrion	33.69	55.33
Os07t0602200-01	Rice	cytosol, nucleus, plastid	57.19	53.24
Zm00001d006780_P011	Maize	cytosol	56.88	52.27
EER97493	Sorghum	plastid	56.72	52.2
TraesCS2A01G177100.1	Wheat	cytosol	55.64	51.95
TraesCS2D01G185200.1	Wheat	cytosol, golgi	55.49	51.8
TraesCS2B01G204100.1	Wheat	cytosol	55.49	51.8
HORVU1Hr1G066760.1	Barley	plastid	34.47	50.91
HORVU2Hr1G032540.2	Barley	plastid	57.5	50.75
Bra001708.1-P	Field mustard	nucleus	21.79	33.81
Bra022329.1-P	Field mustard	nucleus	26.12	29.65
Bra031628.1-P	Field mustard	cytosol	16.69	27.98
Bra011444.1-P	Field mustard	golgi, vacuole	16.85	24.28
Bra040131.1-P	Field mustard	nucleus	17.47	22.51
Bra019424.1-P	Field mustard	cytosol	14.53	22.07
Bra019516.1-P	Field mustard	cytosol	12.83	20.7
Bra018073.1-P	Field mustard	cytosol	12.67	20.55
Bra035858.1-P	Field mustard	nucleus	14.68	20.21
Bra018072.1-P	Field mustard	cytosol	13.14	19.23
Bra009877.1-P	Field mustard	cytosol	10.05	18.62
Bra038607.1-P	Field mustard	cytosol	14.68	16.67

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.10.490.10	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra012984	EnsemblPlants:Bra012984.1	EnsemblPlants:Bra012984.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M4D924
PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	SUPFAM:SSF52768	UniParc:UPI0002540508
InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:	:

Description

AT5G61060 (E=0.0) HDA05, HDA5, ATHDA5 | HDA05 (HISTONE DEACETYLASE 5); histone deacetylase

Coordinates

chrA03:-:21203981..21207045

Molecular Weight (calculated)

71550.0 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.262

Length

647 amino acids

Sequence
(BLAST)

001: MAMAGESSNN NYGDCDGKSH RKVGLVYDET MCKHDTPNGE DHPECPDRIR VIWEKLQLAG VSQRCVVLGG SKAEDKHLQL VHTKDHVSLV KSLSTKKKDY
101: RRNRIASQWN SIYLNGSSSE AAFLAAGSVV ELAEKVAEGE LDCGYAIVRP PGHHAEPDEA MGFCLFNNVA VAASYLLDER PELGVKKILI VDWDVHHGNG
201: TQKMFWKDPR VLFFSVHRHE HGGFYPAGDD GDYNMVGEGP GEGFNINVPW EQGRCGDADY LAAWDHILIP VAKEFNPDII LLSAGFDAAI GDPLGGCRVT
301: PYGYSVMLKK LMDFAQGKIV LALEGGYNLD SIAKSSLACV QVLLEDKPIQ GSSEAYPFES TWRVIQAVRK KLSAYWPSLA DVLSSNLINQ KTPTPIIVFS
401: SSDSETEDYA DDILDQMSRL NIENHHVDTV STSWRRDLSK VDVWYASFGS NMWKPRFLCY IQGGQVEGMK KVCVGSMDKT PPKQIMWESF PHRLFFGRES
501: SVTWGVGGVA FINPLTDLND QTHMCLYRIT LEQFNDVLFQ ENGLKVDSDS PLVDLDTLQL VEKKGSVPLA SGGWYGNVVC LGKECDVPIL TMTCTVAAVE
601: KFKSGEIPLR PPSEAYVNTM VRGLVEGGRL SEEEAKAYID NAASKPL

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.