Factsheet for Zm00001d050139_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010082_P001
Zm00001d010863_P001
Zm00001d012338_P001
Zm00001d028543_P001
Zm00001d038273_P001
Zm00001d042833_P001
Zm00001d047848_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	Zm00001d010082_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d012338_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d028543_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d038273_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d042833_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d047848_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d010863_P001	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	89.61	96.07
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	84.52	90.61
TraesCS6D01G168400.1	Wheat	cytosol	83.71	89.74
TraesCS6B01G210200.1	Wheat	cytosol	83.71	89.74
TraesCS6A01G181100.1	Wheat	cytosol	83.71	89.74
HORVU6Hr1G038010.6	Barley	cytosol	83.1	88.89
GSMUA_Achr2P06520_001	Banana	cytosol	58.66	79.12
GSMUA_AchrUn_...	Banana	mitochondrion	55.6	75.41
KRH54336	Soybean	cytosol, nucleus, plastid	24.03	73.75
VIT_17s0000g09070.t01	Wine grape	cytosol	67.82	71.77
KRH63609	Soybean	cytosol	66.19	69.89
KRH03236	Soybean	nucleus	67.01	69.7
PGSC0003DMT400069419	Potato	nucleus	66.8	69.64
Solyc06g071680.2.1	Tomato	cytosol	66.4	69.21
KRH57122	Soybean	nucleus	67.01	69.12
AT5G63110.1	Thale cress	nucleus	65.58	68.37
CDY48127	Canola	nucleus	64.77	67.66
CDY16736	Canola	nucleus	64.56	67.45
Bra035858.1-P	Field mustard	nucleus	64.56	67.45
Solyc03g112410.1.1	Tomato	cytosol	58.45	63.92
PGSC0003DMT400046818	Potato	cytosol	59.06	63.6
CDX84385	Canola	cytosol	65.17	63.37
Zm00001d016381_P001	Maize	nucleus	52.55	63.24
KRH54335	Soybean	cytosol, nucleus, plastid	28.92	60.68
CDY41500	Canola	cytosol	65.17	56.14
Bra038607.1-P	Field mustard	cytosol	64.56	55.61
Zm00001d053595_P004	Maize	nucleus	56.21	53.38
Zm00001d046388_P001	Maize	nucleus	57.03	52.73
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	9.98	50.52
Zm00001d003813_P001	Maize	cytosol	45.82	50.34
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	19.96	50.0
Zm00001d039202_P001	Maize	nucleus	12.83	37.95
Zm00001d018346_P001	Maize	mitochondrion	16.7	37.1
Zm00001d042974_P001	Maize	mitochondrion	11.0	25.12
Zm00001d046348_P003	Maize	plastid	18.33	23.62
Zm00001d006780_P011	Maize	cytosol	21.38	14.91
Zm00001d010152_P002	Maize	cytosol	15.48	13.5
Zm00001d010162_P002	Maize	cytosol	15.48	13.5
Zm00001d018864_P002	Maize	nucleus	16.9	13.41

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	UniProt:A0A1D6Q029	ProteinID:AQK52013.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009941	GO:GO:0009987	GO:GO:0010228	GO:GO:0010431
GO:GO:0016043	GO:GO:0016441	GO:GO:0016458	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0040029	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse
InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913
PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	UniParc:UPI0008433F92
InterPro:Ureohydrolase_dom_sf	EnsemblPlantsGene:Zm00001d050139	EnsemblPlants:Zm00001d050139_P001	EnsemblPlants:Zm00001d050139_T001	:	:

Description

histone deacetylaseHistone deacetylase

Coordinates

chr4:-:68410505..68416118

Molecular Weight (calculated)

54581.4 Da

IEP (calculated)

5.854

GRAVY (calculated)

-0.307

Length

491 amino acids

Sequence
(BLAST)

001: MAASGEGASL PSPAGGEDAH RRRVSYFYEP SIGDYYYGQG HPMKPHRIRM AHSLVVHYGL HRLLELSRPY PASEADIRRF HSDDYVAFLA SATGNPGVLD
101: PRAIKRFNVG EDCPVFDGLF PFCQASAGGS IGAAVKLNRG DADITVNWAG GLHHAKKSEA SGFCYVNDIV LAILELLKFH RGGYFDHFKC EIDAPLILVF
201: AFKLQTVCCS DSYIVHLFQR VLYVDIDVHH GDGVEEAFFT TNRVMTVSFH KYGDFFPGTG HITDVGAAEG KHYALNVPLS DGIDDTTFRG LFQCIIKKVM
301: EVYQPDVVVL QCGADSLAGD RLGCFNLSVK GHADCLRFLR SYNVPMMVLG GGGYTIRNVA RCWCYETAVA VGVEPDNKLP YNDYYEYFGP DYTLHIQPKS
401: VENLNTTKDL ENIKNMILEN LSKIEHVPST QFHDRPSDPE APEEKEEDMD KRPPQRSRLW SGGAYDSDTE DPDSLKSEGK DVTANFQMKA G

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.