Factsheet for HORVU6Hr1G038010.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G021550.4
HORVU1Hr1G073230.1
HORVU3Hr1G085210.2
HORVU4Hr1G060950.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	HORVU1Hr1G073230.1	AT2G39940.1	12445118
AT5G63110.1	HORVU3Hr1G085210.2	AT2G39940.1	12445118
AT5G63110.1	HORVU4Hr1G060950.3	AT2G39940.1	12445118
AT5G63110.1	HORVU1Hr1G021550.4	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G168400.1	Wheat	cytosol	96.95	97.16
TraesCS6A01G181100.1	Wheat	cytosol	96.95	97.16
TraesCS6B01G210200.1	Wheat	cytosol	96.51	96.72
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	90.41	90.61
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	89.76	89.96
Zm00001d050139_P001	Maize	nucleus	88.89	83.1
GSMUA_Achr2P06520_001	Banana	cytosol	61.22	77.2
GSMUA_AchrUn_...	Banana	mitochondrion	58.82	74.59
KRH54336	Soybean	cytosol, nucleus, plastid	25.49	73.12
VIT_17s0000g09070.t01	Wine grape	cytosol	71.02	70.26
KRH63609	Soybean	cytosol	70.15	69.25
KRH03236	Soybean	nucleus	70.81	68.86
PGSC0003DMT400069419	Potato	nucleus	70.59	68.79
Solyc06g071680.2.1	Tomato	cytosol	70.59	68.79
AT5G63110.1	Thale cress	nucleus	70.15	68.37
KRH57122	Soybean	nucleus	70.81	68.28
Bra035858.1-P	Field mustard	nucleus	68.63	67.02
CDY16736	Canola	nucleus	68.63	67.02
CDY48127	Canola	nucleus	68.41	66.81
Solyc03g112410.1.1	Tomato	cytosol	61.44	62.81
CDX84385	Canola	cytosol	68.85	62.57
PGSC0003DMT400046818	Potato	cytosol	61.66	62.06
KRH54335	Soybean	cytosol, nucleus, plastid	30.5	59.83
CDY41500	Canola	cytosol	68.85	55.44
Bra038607.1-P	Field mustard	cytosol	68.19	54.91
HORVU6Hr1G038710.1	Barley	cytosol	59.91	53.09
HORVU7Hr1G085870.2	Barley	nucleus	59.91	52.99
HORVU4Hr1G044060.1	Barley	cytosol	43.79	49.51
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	20.26	47.45
HORVU2Hr1G072570.5	Barley	plastid	28.1	45.91
HORVU5Hr1G077800.1	Barley	cytosol	46.62	44.21
HORVU5Hr1G077760.1	Barley	cytosol	46.62	43.41
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	22.88	42.34
HORVU0Hr1G021740.4	Barley	cytosol	4.14	24.68
HORVU1Hr1G074110.1	Barley	cytosol	17.86	21.08
HORVU1Hr1G066760.1	Barley	plastid	19.39	20.32
HORVU5Hr1G037920.1	Barley	cytosol	17.43	17.7
HORVU0Hr1G021730.1	Barley	cytosol	3.92	15.0
HORVU2Hr1G032540.2	Barley	plastid	22.22	13.92
HORVU5Hr1G017550.9	Barley	nucleus	18.52	13.84

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	UniProt:A0A287TYH0	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009941	GO:GO:0009987	GO:GO:0010228	GO:GO:0010431	GO:GO:0016043
GO:GO:0016441	GO:GO:0016458	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0040029	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:HORVU6Hr1G038010	EnsemblPlants:HORVU6Hr1G038010.6	InterPro:His_deacetylse
InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913
PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	UniParc:UPI000B478E2D
InterPro:Ureohydrolase_dom_sf	:	:	:	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A287TYH0]

Coordinates

chrchr6H:+:192934143..192937472

Molecular Weight (calculated)

51181.3 Da

IEP (calculated)

5.530

GRAVY (calculated)

-0.391

Length

459 amino acids

Sequence
(BLAST)

001: MAASGEGASL PSPAGGEDGR RRRVSYFYEP TIGDYYYGQG HPMKPHRIRM AHSLVIHYGL HRLLELSRPF PASEADISRF HSDEYVSFLA SATGNPTILD
101: PRAVKRFNVG EDCPVFDGLF PFCQASAGGS IGAAVKLNRG DADITVNWAG GLHHAKKGEA SGFCYVNDIV LAILELLKFH RRVLYIDIDV HHGDGVEEAF
201: FTTNRVMTVS FHKYGDFFPG TGHITDVGAG EGKHYAVNVP LSDGIDDDTF RDLFQCIIKR VMDVYQPEVV VLQCGADSLA GDRLGCFNLS VKGHADCLRF
301: LRSFNVPMMV LGGGGYTIRN VARCWCYETA VAVGVEPDNK LPYNDYYEYF GPDYNLHIQP RIVENLNTTK DLENIKNMIL DHLSKLENVP NAQFHERPSD
401: PEGPEEKEED MDKRPAQRSR LWSGGAYDSD TEDPDNMKIE DNNLSANSIM KIHPYLDKS

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.