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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G073230.1
HORVU2Hr1G031310.9
HORVU2Hr1G074740.2
HORVU2Hr1G074780.1
HORVU2Hr1G075470.2
HORVU3Hr1G085210.2
HORVU3Hr1G098530.4
HORVU4Hr1G060950.3
HORVU4Hr1G070980.1
HORVU4Hr1G087520.3
HORVU5Hr1G060730.3
HORVU5Hr1G062290.6
HORVU6Hr1G038010.6
HORVU7Hr1G075150.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39940.1 HORVU2Hr1G031310.9 AT1G19180.1 17637677
AT2G39940.1 HORVU5Hr1G062290.6 AT1G19180.1 17637677
AT2G39940.1 HORVU2Hr1G031310.9 AT1G19180.1 18547396
AT2G39940.1 HORVU5Hr1G062290.6 AT1G19180.1 18547396
AT2G39940.1 HORVU2Hr1G031310.9 AT1G74950.1 18547396
AT2G39940.1 HORVU5Hr1G062290.6 AT1G74950.1 18547396
AT2G39940.1 HORVU1Hr1G073230.1 AT2G39940.1 12724535
AT2G39940.1 HORVU3Hr1G085210.2 AT2G39940.1 12724535
AT2G39940.1 HORVU4Hr1G060950.3 AT2G39940.1 12724535
AT2G39940.1 HORVU4Hr1G087520.3 AT3G17860.1 17637675
AT2G39940.1 HORVU5Hr1G060730.3 AT3G17860.1 17637675
AT2G39940.1 HORVU4Hr1G087520.3 AT3G17860.1 18547396
AT2G39940.1 HORVU5Hr1G060730.3 AT3G17860.1 18547396
AT2G39940.1 HORVU4Hr1G087520.3 AT3G17860.1 19309455
AT2G39940.1 HORVU5Hr1G060730.3 AT3G17860.1 19309455
AT2G39940.1 HORVU3Hr1G098530.4 AT4G02570.1 12172031
AT2G39940.1 HORVU3Hr1G098530.4 AT4G02570.1 12445118
AT2G39940.1 HORVU3Hr1G098530.4 AT4G02570.1 12724535
AT2G39940.1 HORVU2Hr1G074740.2 AT4G14110.1 12724535
AT2G39940.1 HORVU2Hr1G074780.1 AT4G14110.1 12724535
AT2G39940.1 HORVU2Hr1G075470.2 AT5G08590.1 12172031
AT2G39940.1 HORVU2Hr1G075470.2 AT5G08590.1 14749489
AT2G39940.1 HORVU7Hr1G075150.4 AT5G14250.1 12724535
AT2G39940.1 HORVU4Hr1G070980.1 AT5G42970.1 12724535
AT2G39940.1 HORVU6Hr1G038010.6 AT5G63110.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G214200.1 Wheat cytosol 95.39 95.39
TraesCS4A01G091200.1 Wheat cytosol 95.22 95.22
TraesCS4B01G213500.1 Wheat cytosol 94.03 94.03
Os03t0265500-01 Rice plasma membrane 86.18 85.74
EER95129 Sorghum cytosol 81.57 80.88
Zm00001d047848_P001 Maize cytosol 81.4 80.71
Zm00001d028543_P001 Maize cytosol 81.4 80.71
GSMUA_Achr6P33630_001 Banana cytosol, mitochondrion, nucleus 68.43 68.78
GSMUA_Achr5P28930_001 Banana cytosol 64.16 67.14
GSMUA_Achr9P03690_001 Banana cytosol 68.09 66.17
HORVU1Hr1G073230.1 Barley cytosol 63.14 62.61
HORVU3Hr1G085210.2 Barley cytosol 63.14 62.29
VIT_13s0019g03380.t01 Wine grape cytosol 61.6 60.37
KRH73146 Soybean cytosol 59.56 59.76
KRH14993 Soybean cytosol 57.68 59.51
GSMUA_Achr8P02350_001 Banana cytosol 17.41 59.3
KRG97777 Soybean cytosol 58.87 58.47
KRH31107 Soybean cytosol 58.53 58.14
CDY24941 Canola cytosol 56.66 56.27
AT2G39940.1 Thale cress cytosol 56.83 56.25
Bra000156.1-P Field mustard cytosol 56.48 56.1
Solyc05g052620.2.1 Tomato cytosol 57.68 56.05
CDY20501 Canola cytosol 56.31 54.82
Bra005000.1-P Field mustard cytosol 56.14 54.56
CDX74819 Canola cytosol 55.63 54.33
CDX93223 Canola cytosol 53.24 52.79
CDY07041 Canola cytosol 53.07 52.53
CDX93225 Canola cytosol 53.07 52.36
CDY07040 Canola cytosol 53.75 51.89
Bra017045.1-P Field mustard cytosol 53.75 51.89
Bra017044.1-P Field mustard cytosol 53.07 51.49
CDY60996 Canola endoplasmic reticulum, golgi 56.31 46.94
HORVU5Hr1G075620.2 Barley cytosol 30.38 31.34
HORVU2Hr1G070800.1 Barley cytosol 29.52 30.14
HORVU4Hr1G080360.1 Barley cytosol, peroxisome, plastid 16.89 28.86
HORVU4Hr1G015730.1 Barley cytosol, peroxisome, plastid 16.21 28.44
HORVU6Hr1G077570.1 Barley mitochondrion 29.69 27.71
HORVU1Hr1G021550.4 Barley cytosol 29.01 26.48
HORVU6Hr1G021040.2 Barley extracellular 6.31 26.43
HORVU4Hr1G078120.4 Barley cytosol, plastid 30.03 25.81
Protein Annotations
EMBL:AK353707EnsemblPlants:HORVU4Hr1G060950.3EnsemblPlantsGene:HORVU4Hr1G060950Gene3D:1.20.1280.50Gene3D:3.80.10.10InterPro:IPR032675
InterPro:LRR_dom_sfPANTHER:PTHR43944PANTHER:PTHR43944:SF2SEG:segSUPFAM:SSF52047UniParc:UPI00020044A1
UniProt:F2CQ05MapMan:11.7.2.1.1::::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CQ05]
Coordinates
chrchr4H:-:511455988..511462525
Molecular Weight (calculated)
65722.5 Da
IEP (calculated)
6.812
GRAVY (calculated)
-0.048
Length
586 amino acids
Sequence
(BLAST)
001: MSGDERHLGR TMSFGIPDVA LGLVMGCVED PWDRDAISLV CRHWCKVDAL SRKHVTIAMA YSTTPDRLFR RFPCLESLKL KAKPRAAMFN LIPEDWGGYA
101: SPWIRELSAS FQFLKVLHLR RMIVSNDDLA VLVRAKAHML VSLKLDRCSG FSTPSLALVA RRCKKLETLF LEESSVAEKE NDEWLRELAT SNTVLETLNF
201: FLTDLRASPA HLLLLVRNCR RLKTLKISDC FMSDLVDLFR TAETLQDFAG GSFDDQDQGG NYANYYFPPS VQRLSLLYMG TNEMQILFPY GATLKKLDLQ
301: FTFLTTEDHC QLVQRCPNLE VLEVRDVIGD RGLEVVAQTC KKLHRLRVER GDDDQGGLED EQGRVTQVGL MAVAQGCPDL EYWAVHVSDI TNVALEAIGT
401: FSKNLNDFRL VLLDREVHIA DLPLDNGVRA LLRGCTKLRR FAFYVRPGAL SDIGLNYVGE FSKTVRYMLL GNVGGSDDGL LAFARGCPSL QKLELRSCCF
501: SERTLAVAAL QLKSLRYLWV QGYKASSTGT DLMAMVRPFW NIEFIAPNQS EPCPEGQAQV LAYYSLAGAR TDCPMSVIPL YPSVGS
Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)
001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
Arabidopsis Description
COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.