Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017044.1-P | Field mustard | cytosol | 98.14 | 96.19 |
| CDX93223 | Canola | cytosol | 93.75 | 93.91 |
| CDX93225 | Canola | cytosol | 89.19 | 88.89 |
| CDY07040 | Canola | cytosol | 90.03 | 87.81 |
| CDY24941 | Canola | cytosol | 81.08 | 81.36 |
| CDX74819 | Canola | cytosol | 81.25 | 80.17 |
| CDY20501 | Canola | cytosol | 81.25 | 79.9 |
| AT2G39940.1 | Thale cress | cytosol | 78.38 | 78.38 |
| CDY60996 | Canola | endoplasmic reticulum, golgi | 81.08 | 68.28 |
| KRH31107 | Soybean | cytosol | 64.86 | 65.08 |
| KRG97777 | Soybean | cytosol | 64.53 | 64.75 |
| KRH14993 | Soybean | cytosol | 61.82 | 64.44 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 64.86 | 64.21 |
| KRH73146 | Soybean | cytosol | 63.01 | 63.87 |
| Solyc05g052620.2.1 | Tomato | cytosol | 63.68 | 62.52 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 58.11 | 59.01 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 55.07 | 58.21 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 59.29 | 58.21 |
| Zm00001d042833_P001 | Maize | cytosol | 54.9 | 54.35 |
| Zm00001d012338_P001 | Maize | cytosol | 54.56 | 54.19 |
| Os01t0853400-01 | Rice | cytosol | 54.39 | 54.12 |
| Os05t0449500-01 | Rice | cytosol | 54.56 | 54.1 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 15.71 | 54.07 |
| HORVU3Hr1G085210.2 | Barley | cytosol | 53.55 | 53.37 |
| EES01769 | Sorghum | cytosol | 53.55 | 53.19 |
| TraesCS3A01G367500.1 | Wheat | cytosol | 50.0 | 53.14 |
| EES18318 | Sorghum | cytosol | 53.72 | 53.09 |
| HORVU4Hr1G060950.3 | Barley | cytosol | 52.53 | 53.07 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 53.21 | 53.03 |
| TraesCS3D01G360400.2 | Wheat | cytosol | 53.21 | 52.94 |
| Zm00001d038273_P001 | Maize | cytosol | 53.55 | 52.92 |
| Zm00001d010082_P001 | Maize | cytosol | 53.38 | 52.75 |
| TraesCS4A01G091200.1 | Wheat | cytosol | 51.86 | 52.39 |
| TraesCS4D01G214200.1 | Wheat | cytosol | 51.86 | 52.39 |
| TraesCS1D01G278400.1 | Wheat | cytosol | 52.36 | 52.36 |
| HORVU1Hr1G073230.1 | Barley | cytosol | 52.2 | 52.28 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 51.69 | 52.22 |
| TraesCS1B01G288100.1 | Wheat | cytosol | 52.03 | 52.03 |
| TraesCS1A01G279100.1 | Wheat | cytosol | 52.03 | 52.03 |
| Os03t0265500-01 | Rice | plasma membrane | 51.69 | 51.95 |
| EER95129 | Sorghum | cytosol | 50.17 | 50.25 |
| Zm00001d028543_P001 | Maize | cytosol | 49.49 | 49.58 |
| Zm00001d047848_P001 | Maize | cytosol | 49.49 | 49.58 |
| CDY68868 | Canola | cytosol | 29.22 | 32.04 |
| CDY53998 | Canola | cytosol | 30.24 | 30.65 |
| CDY26594 | Canola | cytosol | 29.73 | 30.45 |
| CDX71968 | Canola | cytosol | 29.73 | 30.45 |
| CDY34211 | Canola | cytosol | 29.56 | 30.43 |
| CDY16034 | Canola | cytosol | 29.73 | 30.4 |
| CDY28523 | Canola | cytosol | 29.39 | 30.26 |
| CDY31282 | Canola | cytosol | 29.56 | 29.81 |
| CDY21068 | Canola | cytosol | 29.56 | 29.66 |
| CDY11468 | Canola | cytosol | 29.73 | 29.58 |
| CDX76680 | Canola | cytosol | 29.56 | 29.41 |
| CDY53774 | Canola | cytosol | 29.05 | 29.35 |
| CDX90899 | Canola | cytosol | 28.55 | 28.84 |
| CDY03450 | Canola | cytosol | 29.39 | 28.52 |
| CDY21439 | Canola | cytosol | 29.05 | 28.48 |
| CDY34286 | Canola | cytosol | 29.22 | 28.41 |
| CDX83172 | Canola | cytosol, plastid | 28.89 | 28.17 |
| CDX67912 | Canola | endoplasmic reticulum, golgi | 30.24 | 27.75 |
| CDX97301 | Canola | cytosol | 4.22 | 27.17 |
| CDX89163 | Canola | cytosol | 28.55 | 27.0 |
| CDY21947 | Canola | plastid, vacuole | 28.21 | 26.68 |
| CDY22108 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 28.38 | 26.29 |
Protein Annotations
| EnsemblPlants:CDY07041 | EnsemblPlantsGene:GSBRNA2T00123358001 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR43944 | PANTHER:PTHR43944:SF6 | ProteinID:CDY07041 | ProteinID:CDY07041.1 | SUPFAM:SSF52047 | UniParc:UPI0004EE5C2E |
| MapMan:11.7.2.1.1 | : | : | : | : | : |
Description
BnaA04g22740D
Coordinates
chrLK031974:-:812077..814652
Molecular Weight (calculated)
67577.4 Da
IEP (calculated)
7.850
GRAVY (calculated)
-0.206
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPDTKKLR STPRNVDDVI SIVMPYVTDP KDRESASLVN RTWLRADSET RYHVTMALCY ASAPDRLSRR FPNLRSLKLK GKPRAAMFNL IPENWGGFVT
101: PWVNEIALSL RRIRSVHFRR MIVNDLDLDV LARARGDELE VLKLDKCLGF STDGLFTVVK HCRKIKTLVM EESSFLEKDG KWLHELALHN TSLEVLNLYM
201: TELTKLNPRD LETIATNCHR SLVSVKVGDV EMLELVGFFK SAVNLEEFCG GAFTPETPDK YTKLTLPPKL SRLGLTYLGA NEMPMIFPFA AQIRKLDLLY
301: AFLGTDDHCE LIQKCPNLEV LETRNVIGDK GLEILAQCCK QLKRLRIERG ADEEGMMDEI WGGFVTQRGL TALAQGCQKL EYMAVYVTDI SNECLRTIGA
401: YLKNLSDFRL VLLDQEERIR DLPLDNGVRS LLMGCEKLRR FAFYLRRGGL TDVGLRYIGQ YSPNVRWMLL GYVGETDEGL VEFSREGCCP KLQKLEMRGC
501: CFSERAIAAA VMKLPSLRYL WVQGYRESVT GQDLRVMSRP NWNIELIPAR RVPEVNLGDV REMEHPAHIL AYYSLAGQRT DCPPTVKVLR EL
101: PWVNEIALSL RRIRSVHFRR MIVNDLDLDV LARARGDELE VLKLDKCLGF STDGLFTVVK HCRKIKTLVM EESSFLEKDG KWLHELALHN TSLEVLNLYM
201: TELTKLNPRD LETIATNCHR SLVSVKVGDV EMLELVGFFK SAVNLEEFCG GAFTPETPDK YTKLTLPPKL SRLGLTYLGA NEMPMIFPFA AQIRKLDLLY
301: AFLGTDDHCE LIQKCPNLEV LETRNVIGDK GLEILAQCCK QLKRLRIERG ADEEGMMDEI WGGFVTQRGL TALAQGCQKL EYMAVYVTDI SNECLRTIGA
401: YLKNLSDFRL VLLDQEERIR DLPLDNGVRS LLMGCEKLRR FAFYLRRGGL TDVGLRYIGQ YSPNVRWMLL GYVGETDEGL VEFSREGCCP KLQKLEMRGC
501: CFSERAIAAA VMKLPSLRYL WVQGYRESVT GQDLRVMSRP NWNIELIPAR RVPEVNLGDV REMEHPAHIL AYYSLAGQRT DCPPTVKVLR EL
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.