Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033654.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX71533 | Canola | cytosol | 99.5 | 99.5 |
| CDY02426 | Canola | cytosol | 95.97 | 95.97 |
| CDY61016 | Canola | cytosol | 95.47 | 95.47 |
| AT5G42970.1 | Thale cress | cytosol | 92.7 | 92.7 |
| VIT_18s0001g12250.t01 | Wine grape | cytosol | 84.38 | 84.38 |
| KRH39972 | Soybean | cytosol | 83.38 | 83.38 |
| KRH23810 | Soybean | cytosol | 83.12 | 83.12 |
| Solyc04g080160.2.1 | Tomato | cytosol | 83.12 | 83.12 |
| PGSC0003DMT400013225 | Potato | cytosol | 82.87 | 82.87 |
| Os03t0197400-01 | Rice | cytosol, nucleus, plastid | 83.12 | 82.71 |
| GSMUA_Achr9P19410_001 | Banana | cytosol | 82.87 | 82.46 |
| HORVU4Hr1G070980.1 | Barley | cytosol | 82.62 | 82.21 |
| TraesCS4B01G262600.1 | Wheat | golgi | 82.62 | 82.21 |
| EER92695 | Sorghum | cytosol, nucleus, plastid | 82.62 | 82.21 |
| TraesCS4D01G262700.1 | Wheat | cytosol, nucleus, plastid | 82.37 | 81.95 |
| TraesCS4A01G041600.1 | Wheat | cytosol, nucleus, plastid | 81.86 | 81.45 |
| GSMUA_Achr8P31220_001 | Banana | cytosol | 76.83 | 79.84 |
| Zm00001d028143_P002 | Maize | cytosol, nucleus, plastid | 82.87 | 74.94 |
| VIT_12s0035g01450.t01 | Wine grape | mitochondrion | 31.99 | 72.57 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:19.2.3.3.1.4 | UniProt:A0A078GAG6 | EnsemblPlants:CDY22374 | ProteinID:CDY22374 | ProteinID:CDY22374.1 |
| InterPro:CSN4 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0008180 | EnsemblPlantsGene:GSBRNA2T00018858001 | InterPro:IPR000717 | InterPro:IPR036388 | InterPro:PCI_dom | PFAM:PF01399 |
| PFscan:PS50250 | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF2 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI000253F811 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | : | : | : |
Description
BnaA06g36960DBnaA06g36960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAG6]
Coordinates
chrLK032130:+:365259..368072
Molecular Weight (calculated)
45036.0 Da
IEP (calculated)
4.793
GRAVY (calculated)
-0.285
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETLRSASA IADQRQKIEQ YKLILSSVLS SNDLLQAKHF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIALFT LTQIQPRVVS FEEQALVIRE
101: KLAALYESEQ EWSRAAQMLS GIDLDSGMRA VDENFKLSKC IQIARLYLED DDAVNAETYI NKASFLVNSS QNEVLNLQYK VCHARILDMK RKFLDAALRY
201: YSISQIEKRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELRPHQKA TLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLGID PTKAEKIASN MIGQDRMRGS IDQEEAVIHF EDDIEELQQW DHQISGLCQA LNDILDGMAK KGLPVPV
101: KLAALYESEQ EWSRAAQMLS GIDLDSGMRA VDENFKLSKC IQIARLYLED DDAVNAETYI NKASFLVNSS QNEVLNLQYK VCHARILDMK RKFLDAALRY
201: YSISQIEKRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELRPHQKA TLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLGID PTKAEKIASN MIGQDRMRGS IDQEEAVIHF EDDIEELQQW DHQISGLCQA LNDILDGMAK KGLPVPV
001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
Arabidopsis Description
CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.