Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035336.1-P | Field mustard | cytosol | 93.2 | 93.2 |
| CDY02426 | Canola | cytosol | 93.2 | 93.2 |
| CDY22374 | Canola | cytosol | 92.7 | 92.7 |
| CDY61016 | Canola | cytosol | 92.7 | 92.7 |
| Bra033654.1-P | Field mustard | cytosol | 92.7 | 92.7 |
| CDX71533 | Canola | cytosol | 92.19 | 92.19 |
| VIT_18s0001g12250.t01 | Wine grape | cytosol | 85.64 | 85.64 |
| GSMUA_Achr9P19410_001 | Banana | cytosol | 84.89 | 84.46 |
| Os03t0197400-01 | Rice | cytosol, nucleus, plastid | 84.89 | 84.46 |
| KRH39972 | Soybean | cytosol | 83.88 | 83.88 |
| TraesCS4B01G262600.1 | Wheat | golgi | 84.13 | 83.71 |
| HORVU4Hr1G070980.1 | Barley | cytosol | 84.13 | 83.71 |
| KRH23810 | Soybean | cytosol | 83.63 | 83.63 |
| TraesCS4D01G262700.1 | Wheat | cytosol, nucleus, plastid | 83.88 | 83.46 |
| EER92695 | Sorghum | cytosol, nucleus, plastid | 83.88 | 83.46 |
| TraesCS4A01G041600.1 | Wheat | cytosol, nucleus, plastid | 83.63 | 83.21 |
| Solyc04g080160.2.1 | Tomato | cytosol | 82.62 | 82.62 |
| PGSC0003DMT400013225 | Potato | cytosol | 82.37 | 82.37 |
| GSMUA_Achr8P31220_001 | Banana | cytosol | 78.34 | 81.41 |
| Zm00001d028143_P002 | Maize | cytosol, nucleus, plastid | 84.13 | 76.08 |
| VIT_12s0035g01450.t01 | Wine grape | mitochondrion | 33.25 | 75.43 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:19.2.3.3.1.4 | EntrezGene:834312 | UniProt:A0A178UIE2 | ProteinID:AED94896.1 | EMBL:AF176089 |
| EMBL:AF395060 | EMBL:AK176360 | ArrayExpress:AT5G42970 | EnsemblPlantsGene:AT5G42970 | RefSeq:AT5G42970 | TAIR:AT5G42970 |
| RefSeq:AT5G42970-TAIR-G | EnsemblPlants:AT5G42970.1 | TAIR:AT5G42970.1 | EMBL:AY087068 | Unigene:At.23570 | ProteinID:BAB09199.1 |
| EMBL:BT025548 | Symbol:COP8 | InterPro:CSN4 | GO:GO:0000338 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009585 | GO:GO:0009605 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010017 | GO:GO:0010971 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019784 | GO:GO:0043234 | InterPro:IPR000717 | InterPro:IPR036388 | RefSeq:NP_199111.1 | ProteinID:OAO92431.1 |
| InterPro:PCI_dom | PFAM:PF01399 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50250 | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF2 | UniProt:Q1H5B6 | UniProt:Q8L5U0 | SMART:SM00088 |
| SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI00000A5CB8 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | : |
Description
CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
Coordinates
chr5:-:17237153..17240816
Molecular Weight (calculated)
44959.8 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.293
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.