Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g080160.2.1 | Tomato | cytosol | 99.75 | 99.75 |
| VIT_18s0001g12250.t01 | Wine grape | cytosol | 90.18 | 90.18 |
| KRH39972 | Soybean | cytosol | 89.17 | 89.17 |
| KRH23810 | Soybean | cytosol | 88.92 | 88.92 |
| GSMUA_Achr9P19410_001 | Banana | cytosol | 85.89 | 85.46 |
| GSMUA_Achr8P31220_001 | Banana | cytosol | 81.61 | 84.82 |
| TraesCS4D01G262700.1 | Wheat | cytosol, nucleus, plastid | 85.14 | 84.71 |
| EER92695 | Sorghum | cytosol, nucleus, plastid | 85.14 | 84.71 |
| TraesCS4B01G262600.1 | Wheat | golgi | 84.89 | 84.46 |
| Os03t0197400-01 | Rice | cytosol, nucleus, plastid | 84.89 | 84.46 |
| HORVU4Hr1G070980.1 | Barley | cytosol | 84.89 | 84.46 |
| TraesCS4A01G041600.1 | Wheat | cytosol, nucleus, plastid | 84.38 | 83.96 |
| Bra033654.1-P | Field mustard | cytosol | 82.87 | 82.87 |
| CDY22374 | Canola | cytosol | 82.87 | 82.87 |
| CDX71533 | Canola | cytosol | 82.62 | 82.62 |
| AT5G42970.1 | Thale cress | cytosol | 82.37 | 82.37 |
| CDY02426 | Canola | cytosol | 81.86 | 81.86 |
| Bra035336.1-P | Field mustard | cytosol | 81.86 | 81.86 |
| CDY61016 | Canola | cytosol | 81.61 | 81.61 |
| VIT_12s0035g01450.t01 | Wine grape | mitochondrion | 34.01 | 77.14 |
| Zm00001d028143_P002 | Maize | cytosol, nucleus, plastid | 85.14 | 76.99 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:102583259 | MapMan:19.2.3.3.1.4 | InterPro:CSN4 | GO:GO:0000338 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0010971 |
| GO:GO:0019538 | InterPro:IPR000717 | InterPro:IPR036388 | UniProt:M1A2I7 | InterPro:PCI_dom | PFAM:PF01399 |
| EnsemblPlantsGene:PGSC0003DMG400005163 | PGSC:PGSC0003DMG400005163 | EnsemblPlants:PGSC0003DMT400013225 | PFscan:PS50250 | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF2 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000294898E | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| RefSeq:XP_006341917.1 | SEG:seg | : | : | : | : |
Description
Cop9 complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400005163]
Coordinates
chr4:+:69560180..69568828
Molecular Weight (calculated)
45336.4 Da
IEP (calculated)
4.640
GRAVY (calculated)
-0.241
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MESAFASASA ISDQRQKIEQ YKHILSTVLA SSDIQQAKQF IDHMLSDDVP LVVSRQLLQT FAQEFDRLEP DVQKEVAHYT LNQIQPRVVS FEEQVLIIRE
101: KLAELYESEQ QWSKAAQMLS GIDLDSAMRF VDDTFRISKC VQIARLYLED DDAVNAEAFI NKASFKVNNI KNEVLNLQYK VCYARILDLK RKFLEAALRY
201: YDISQIEKRQ IGDEEIDEAA LEQALAAAVT CTILAAAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELKPHQQA LLPDNFTVLD
301: RAMIEHNLLS ASKLYTNISF DELGTLLGIP PQKAEKIASR MIFEDRMQGS IDQVEGVIHF EDDTEELQQW DQQIMGLCQA LNDVLDSMAK KGLPIPV
101: KLAELYESEQ QWSKAAQMLS GIDLDSAMRF VDDTFRISKC VQIARLYLED DDAVNAEAFI NKASFKVNNI KNEVLNLQYK VCYARILDLK RKFLEAALRY
201: YDISQIEKRQ IGDEEIDEAA LEQALAAAVT CTILAAAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELKPHQQA LLPDNFTVLD
301: RAMIEHNLLS ASKLYTNISF DELGTLLGIP PQKAEKIASR MIFEDRMQGS IDQVEGVIHF EDDTEELQQW DQQIMGLCQA LNDVLDSMAK KGLPIPV
001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
Arabidopsis Description
CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.