Factsheet for Solyc04g080160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005840.2.1
Solyc01g008840.2.1
Solyc01g090290.2.1
Solyc01g091650.2.1
Solyc01g099290.2.1
Solyc01g104600.2.1
Solyc02g021470.2.1
Solyc02g070460.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1
Solyc05g052620.2.1
Solyc06g073150.2.1
Solyc07g040690.2.1
Solyc10g005660.2.1
Solyc10g081150.1.1
Solyc11g017300.1.1
Solyc11g062430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42970.1	Solyc01g090290.2.1	AT1G02090.1	11742986
AT5G42970.1	Solyc01g090290.2.1	AT1G02090.1	11854419
AT5G42970.1	Solyc01g090290.2.1	AT1G02090.1	12615944
AT5G42970.1	Solyc06g073150.2.1	AT1G22920.1	12615944
AT5G42970.1	Solyc11g017300.1.1	AT1G22920.1	12615944
AT5G42970.1	Solyc07g040690.2.1	AT1G64280.1	19490895
AT5G42970.1	Solyc06g073150.2.1	AT1G71230.1	11742986
AT5G42970.1	Solyc11g017300.1.1	AT1G71230.1	11742986
AT5G42970.1	Solyc01g008840.2.1	AT2G26990.1	12615944
AT5G42970.1	Solyc10g081150.1.1	AT2G26990.1	12615944
AT5G42970.1	Solyc11g062430.1.1	AT2G26990.1	12615944
AT5G42970.1	Solyc05g052620.2.1	AT2G39940.1	12724535
AT5G42970.1	Solyc01g005840.2.1	AT3G13550.1	11877375
AT5G42970.1	Solyc01g091650.2.1	AT3G61140.1	11854419
AT5G42970.1	Solyc01g091650.2.1	AT3G61140.1	12615944
AT5G42970.1	Solyc01g099290.2.1	AT4G02570.1	12724535
AT5G42970.1	Solyc01g104600.2.1	AT4G14110.1	11854419
AT5G42970.1	Solyc01g104600.2.1	AT4G14110.1	12615944
AT5G42970.1	Solyc02g093920.2.1	AT5G14250.1	11742986
AT5G42970.1	Solyc02g093920.2.1	AT5G14250.1	12615944
AT5G42970.1	Solyc02g093920.2.1	AT5G14250.1	12724535
AT5G42970.1	Solyc04g080160.2.1	AT5G42970.1	12615944
AT5G42970.1	Solyc02g021470.2.1	AT5G46210.1	16844902
AT5G42970.1	Solyc02g070460.2.1	AT5G46210.1	16844902
AT5G42970.1	Solyc10g005660.2.1	AT5G56280.1	11701877
AT5G42970.1	Solyc10g005660.2.1	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013225	Potato	cytosol	99.75	99.75
VIT_18s0001g12250.t01	Wine grape	cytosol	90.43	90.43
KRH39972	Soybean	cytosol	89.42	89.42
KRH23810	Soybean	cytosol	89.17	89.17
GSMUA_Achr9P19410_001	Banana	cytosol	86.15	85.71
GSMUA_Achr8P31220_001	Banana	cytosol	81.86	85.08
TraesCS4D01G262700.1	Wheat	cytosol, nucleus, plastid	85.39	84.96
EER92695	Sorghum	cytosol, nucleus, plastid	85.39	84.96
TraesCS4B01G262600.1	Wheat	golgi	85.14	84.71
Os03t0197400-01	Rice	cytosol, nucleus, plastid	85.14	84.71
HORVU4Hr1G070980.1	Barley	cytosol	85.14	84.71
TraesCS4A01G041600.1	Wheat	cytosol, nucleus, plastid	84.63	84.21
Bra033654.1-P	Field mustard	cytosol	83.12	83.12
CDY22374	Canola	cytosol	83.12	83.12
CDX71533	Canola	cytosol	82.87	82.87
AT5G42970.1	Thale cress	cytosol	82.62	82.62
CDY02426	Canola	cytosol	82.12	82.12
Bra035336.1-P	Field mustard	cytosol	82.12	82.12
CDY61016	Canola	cytosol	81.86	81.86
Zm00001d028143_P002	Maize	cytosol, nucleus, plastid	85.39	77.22
VIT_12s0035g01450.t01	Wine grape	mitochondrion	34.01	77.14

Protein Annotations

Gene3D:1.10.10.10	MapMan:19.2.3.3.1.4	InterPro:CSN4	GO:GO:0000338	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987
GO:GO:0010971	GO:GO:0016787	GO:GO:0019538	GO:GO:0019784	InterPro:IPR000717	InterPro:IPR036388
UniProt:K4BV95	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10855	PANTHER:PTHR10855:SF2
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc04g080160.2	EnsemblPlants:Solyc04g080160.2.1	UniParc:UPI0002765661
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:64419393..64428069

Molecular Weight (calculated)

45364.5 Da

IEP (calculated)

4.686

GRAVY (calculated)

-0.244

Length

397 amino acids

Sequence
(BLAST)

001: MESAFASASA ISDQRQKIEQ YKHILSTVLA SSDIQQAKQF IDHMLSDDVP LVVSRQLLQT FAQEFDRLEP DVQKEVAHYT LNQIQPRVVS FEEQVLIIRE
101: KLAELYESEQ QWSKAAQMLS GIDLDSAMRF VDDTFRISKC VQIARLYLED DDAVNAEAFI NKASFKVNNI KNEVLNLQYK VCYARILDLK RKFLEAALRY
201: YDISQIEKRQ IGDEEIDEAA LEQALAAAVT CTILAAAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELKPHQQA LLPDNFTVLD
301: RAMIEHNLLS ASKLYTNISF DELGTLLGIP PQKAEKIASR MIFEDRMRGS IDQVEGVIHF EDDTEELQQW DQQIMGLCQA LNDVLDSMAK KGLPIPV

Best Arabidopsis Sequence Match ( AT5G42970.1 )
(BLAST)

001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV

Arabidopsis Description

CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.