Factsheet for Solyc01g090290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g088370.2.1
Solyc01g091650.2.1
Solyc01g104600.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1
Solyc06g073150.2.1
Solyc10g005660.2.1
Solyc10g079880.1.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02090.1	Solyc06g073150.2.1	AT1G71230.1	11742986
AT1G02090.1	Solyc11g017300.1.1	AT1G71230.1	11742986
AT1G02090.1	Solyc10g079880.1.1	AT3G57290.1	11029466
AT1G02090.1	Solyc01g091650.2.1	AT3G61140.1	10330469
AT1G02090.1	Solyc01g091650.2.1	AT3G61140.1	11742986
AT1G02090.1	Solyc01g091650.2.1	AT3G61140.1	12615944
AT1G02090.1	Solyc01g104600.2.1	AT4G14110.1	10330469
AT1G02090.1	Solyc01g104600.2.1	AT4G14110.1	12615944
AT1G02090.1	Solyc10g005660.2.1	AT4G26430.1	11742986
AT1G02090.1	Solyc02g093920.2.1	AT5G14250.1	11742986
AT1G02090.1	Solyc02g093920.2.1	AT5G14250.1	12615944
AT1G02090.1	Solyc01g088370.2.1	AT5G25780.1	11029466
AT1G02090.1	Solyc04g080160.2.1	AT5G42970.1	11854419
AT1G02090.1	Solyc04g080160.2.1	AT5G42970.1	12615944
AT1G02090.1	Solyc10g005660.2.1	AT5G56280.1	11701877
AT1G02090.1	Solyc10g005660.2.1	AT5G56280.1	11742986
AT1G02090.1	Solyc10g005660.2.1	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g01580.t01	Wine grape	cytosol	84.56	84.56
PGSC0003DMT400067022	Potato	cytosol	95.37	83.45
Zm00001d020231_P001	Maize	cytosol	21.24	80.88
Zm00001d023916_P001	Maize	cytosol	14.67	80.85
KRH13242	Soybean	cytosol	80.31	80.31
CDX90073	Canola	cytosol	18.92	79.03
KRH20583	Soybean	cytosol	78.38	78.38
AT1G02090.1	Thale cress	cytosol	74.13	73.85
CDY38053	Canola	cytosol	72.97	72.14
Bra032666.1-P	Field mustard	cytoskeleton, cytosol, nucleus	72.2	71.37
CDY01302	Canola	nucleus	71.04	70.77
Bra012303.1-P	Field mustard	nucleus	71.04	70.77
Bra033219.1-P	Field mustard	cytosol	25.87	70.53
CDY00413	Canola	cytosol	70.66	70.38
GSMUA_Achr2P12070_001	Banana	cytosol	70.27	69.73
GSMUA_Achr4P21630_001	Banana	cytosol	67.95	67.95
TraesCS2D01G239100.1	Wheat	golgi	65.25	64.75
Zm00001d006410_P013	Maize	nucleus	65.25	64.75
Os07t0490800-01	Rice	cytosol, plasma membrane	30.12	64.46
KXG36255	Sorghum	nucleus	64.86	64.37
TraesCS2A01G228300.1	Wheat	nucleus	64.86	64.37
TraesCS2B01G253600.2	Wheat	nucleus	64.86	64.37
Zm00001d004607_P001	Maize	nucleus	40.93	64.24
HORVU2Hr1G050230.9	Barley	nucleus	64.09	63.6
CDY15130	Canola	extracellular	26.25	60.71
KRH01071	Soybean	nucleus	64.86	59.79
Zm00001d021522_P002	Maize	cytosol, plasma membrane	64.09	59.71

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.7	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008180	GO:GO:0009987	GO:GO:0010387	GO:GO:0016043	GO:GO:0019538	InterPro:IPR000717
UniProt:K4AYX0	InterPro:PCI_dom	PFscan:PS50250	PANTHER:PTHR15350	PANTHER:PTHR15350:SF5	SMART:SM00088
SMART:SM00753	EnsemblPlantsGene:Solyc01g090290.2	EnsemblPlants:Solyc01g090290.2.1	UniParc:UPI0002761D63	SEG:seg	:

Description

COP9 signalosome complex subunit 7 [Source:Projected from Arabidopsis thaliana (AT1G02090) UniProtKB/Swiss-Prot;Acc:Q94JU3]

Coordinates

chr1:+:83955347..83964727

Molecular Weight (calculated)

29309.0 Da

IEP (calculated)

4.980

GRAVY (calculated)

-0.359

Length

259 amino acids

Sequence
(BLAST)

001: MDIEQKQAEH IDFFVKQASA LKGSALTTVI VEATSHPSLF AFSEILSVPS VLELGGTENS VYLDLLRLFA HGTWSDYKSI AGCLPQLASA QALKLKQLTV
101: LTLADTSKEL PYDQLMQELD VTNVRELEDF LINECMYVGI VRGKLDQLKR CFEVQFAAGR DLRPGQLGNM LQTLTDWLTT SDNLLVSIQE KIKWADTMSE
201: SDRKHRKEVE ERVDEVKKSL SLKADVDFRG HEEIYSESGG VMDYEEDRGR PKRRRHPIG

Best Arabidopsis Sequence Match ( AT1G02090.1 )
(BLAST)

001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR

Arabidopsis Description

CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.