Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G239100.1 | Wheat | golgi | 99.23 | 99.23 |
| TraesCS2A01G228300.1 | Wheat | nucleus | 98.85 | 98.85 |
| Zm00001d023916_P001 | Maize | cytosol | 17.24 | 95.74 |
| Zm00001d020231_P001 | Maize | cytosol | 24.9 | 95.59 |
| HORVU2Hr1G050230.9 | Barley | nucleus | 94.64 | 94.64 |
| KXG36255 | Sorghum | nucleus | 94.25 | 94.25 |
| Zm00001d006410_P013 | Maize | nucleus | 93.1 | 93.1 |
| Zm00001d021522_P002 | Maize | cytosol, plasma membrane | 90.04 | 84.53 |
| Zm00001d004607_P001 | Maize | nucleus | 52.11 | 82.42 |
| Os07t0490800-01 | Rice | cytosol, plasma membrane | 36.78 | 79.34 |
| GSMUA_Achr2P12070_001 | Banana | cytosol | 73.95 | 73.95 |
| GSMUA_Achr4P21630_001 | Banana | cytosol | 71.65 | 72.2 |
| CDX90073 | Canola | cytosol | 16.86 | 70.97 |
| VIT_15s0021g01580.t01 | Wine grape | cytosol | 68.58 | 69.11 |
| KRH13242 | Soybean | cytosol | 67.43 | 67.95 |
| KRH20583 | Soybean | cytosol | 66.67 | 67.18 |
| Solyc01g090290.2.1 | Tomato | cytosol | 64.37 | 64.86 |
| AT1G02090.1 | Thale cress | cytosol | 62.84 | 63.08 |
| CDY38053 | Canola | cytosol | 61.69 | 61.45 |
| Bra032666.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 61.3 | 61.07 |
| Bra033219.1-P | Field mustard | cytosol | 22.22 | 61.05 |
| CDY00413 | Canola | cytosol | 60.54 | 60.77 |
| Bra012303.1-P | Field mustard | nucleus | 60.54 | 60.77 |
| CDY01302 | Canola | nucleus | 59.77 | 60.0 |
| CDY15130 | Canola | extracellular | 24.52 | 57.14 |
| PGSC0003DMT400067022 | Potato | cytosol | 63.98 | 56.42 |
| KRH01071 | Soybean | nucleus | 56.7 | 52.67 |
| VIT_02s0234g00120.t01 | Wine grape | cytosol | 52.11 | 52.51 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G253600.2 | EnsemblPlantsGene:TraesCS2B01G253600 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom | ncoils:Coil |
| PANTHER:PTHR15350 | PANTHER:PTHR15350:SF5 | PFAM:PF01399 | PFscan:PS50250 | SEG:seg | SMART:SM00088 |
| SMART:SM00753 | MapMan:19.2.3.3.1.7 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:278435641..278439523
Molecular Weight (calculated)
29491.1 Da
IEP (calculated)
4.966
GRAVY (calculated)
-0.427
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMDAERRQA ELIEQFSAQA AALSSAPQLA ALVLEATSHP ALFAFSELLT LPALSKLTGT QYASSLDLLR LFAYGTLKDY KSNSSALPAL LPDQARKLKQ
101: LSVLTLAEST KVLPYDQLMQ ELDVSNVREL EDFLINECMY SGIVRGKLDQ LRRCFEVQFA AGRDLTPDQL TNMIETLSDW LGTSDNLLHH IQEKIKWADT
201: TSELNKKHQK EFEDRVEEAK KSVKQADNDL RGHDDFLSES GGIMDFEEDR IRPKRRRQPM A
101: LSVLTLAEST KVLPYDQLMQ ELDVSNVREL EDFLINECMY SGIVRGKLDQ LRRCFEVQFA AGRDLTPDQL TNMIETLSDW LGTSDNLLHH IQEKIKWADT
201: TSELNKKHQK EFEDRVEEAK KSVKQADNDL RGHDDFLSES GGIMDFEEDR IRPKRRRQPM A
001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
Arabidopsis Description
CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.