Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023916_P001 | Maize | cytosol | 12.74 | 70.21 |
| Zm00001d020231_P001 | Maize | cytosol | 17.76 | 67.65 |
| VIT_15s0021g01580.t01 | Wine grape | cytosol | 63.32 | 63.32 |
| GSMUA_Achr4P21630_001 | Banana | cytosol | 55.21 | 55.21 |
| GSMUA_Achr2P12070_001 | Banana | cytosol | 55.6 | 55.17 |
| KXG36255 | Sorghum | nucleus | 52.9 | 52.49 |
| TraesCS2D01G239100.1 | Wheat | golgi | 52.9 | 52.49 |
| Zm00001d006410_P013 | Maize | nucleus | 52.9 | 52.49 |
| TraesCS2B01G253600.2 | Wheat | nucleus | 52.51 | 52.11 |
| HORVU2Hr1G050230.9 | Barley | nucleus | 52.12 | 51.72 |
| TraesCS2A01G228300.1 | Wheat | nucleus | 51.74 | 51.34 |
| Os07t0490800-01 | Rice | cytosol, plasma membrane | 23.55 | 50.41 |
| Zm00001d021522_P002 | Maize | cytosol, plasma membrane | 52.51 | 48.92 |
| Zm00001d004607_P001 | Maize | nucleus | 30.89 | 48.48 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100241435 | wikigene:100241435 | MapMan:19.2.3.3.1.7 | ProteinID:CCB50073 | ProteinID:CCB50073.1 |
| UniProt:F6HCX8 | EMBL:FN595528 | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR000717 | EntrezGene:LOC100241435 | wikigene:LOC100241435 | InterPro:PCI_dom | PFAM:PF01399 |
| PFscan:PS50250 | PANTHER:PTHR15350 | PANTHER:PTHR15350:SF5 | SMART:SM00088 | SMART:SM00753 | UniParc:UPI0002109E0F |
| ArrayExpress:VIT_02s0234g00120 | EnsemblPlantsGene:VIT_02s0234g00120 | EnsemblPlants:VIT_02s0234g00120.t01 | RefSeq:XP_003631371 | RefSeq:XP_003631371.1 | RefSeq:XP_019071757.1 |
Description
No Description!
Coordinates
chr2:+:142418..176185
Molecular Weight (calculated)
29615.9 Da
IEP (calculated)
5.234
GRAVY (calculated)
-0.225
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAEQRETQA IEQFVKRASD LEGSSLVDFI IQATSHSSLF AFSEILAVPS VVELHGTQYS VYIDLLRLFA HGTWRDYKSN AGFLPELVPD QVLKLKQLSI
101: LTLAEKNKVL SYYQLMQELD ISNVRELEDF LINECINAGI VRGKLNQLQK CFEVQFAAGR DLRPGTLVSL IQTLTNWLST SDKMLLTIKE MIDQADRMKE
201: LDMEHQKEVE EKIELAKKFL QNKPSIKLGP LEDIDMLYMD EVMSSRELGT HSKRKRTSI
101: LTLAEKNKVL SYYQLMQELD ISNVRELEDF LINECINAGI VRGKLNQLQK CFEVQFAAGR DLRPGTLVSL IQTLTNWLST SDKMLLTIKE MIDQADRMKE
201: LDMEHQKEVE EKIELAKKFL QNKPSIKLGP LEDIDMLYMD EVMSSRELGT HSKRKRTSI
001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
Arabidopsis Description
CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.