Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023916_P001 | Maize | cytosol | 15.71 | 87.23 |
| Zm00001d020231_P001 | Maize | cytosol | 22.61 | 86.76 |
| GSMUA_Achr4P21630_001 | Banana | cytosol | 82.76 | 83.4 |
| KXG36255 | Sorghum | nucleus | 75.48 | 75.48 |
| Zm00001d006410_P013 | Maize | nucleus | 75.48 | 75.48 |
| KRH13242 | Soybean | cytosol | 74.33 | 74.9 |
| TraesCS2B01G253600.2 | Wheat | nucleus | 73.95 | 73.95 |
| Zm00001d004607_P001 | Maize | nucleus | 46.74 | 73.94 |
| KRH20583 | Soybean | cytosol | 73.18 | 73.75 |
| TraesCS2D01G239100.1 | Wheat | golgi | 73.56 | 73.56 |
| TraesCS2A01G228300.1 | Wheat | nucleus | 73.56 | 73.56 |
| HORVU2Hr1G050230.9 | Barley | nucleus | 73.56 | 73.56 |
| Os07t0490800-01 | Rice | cytosol, plasma membrane | 34.1 | 73.55 |
| VIT_15s0021g01580.t01 | Wine grape | cytosol | 72.41 | 72.97 |
| CDX90073 | Canola | cytosol | 17.24 | 72.58 |
| Solyc01g090290.2.1 | Tomato | cytosol | 69.73 | 70.27 |
| Zm00001d021522_P002 | Maize | cytosol, plasma membrane | 73.18 | 68.7 |
| AT1G02090.1 | Thale cress | cytosol | 68.2 | 68.46 |
| CDY38053 | Canola | cytosol | 67.05 | 66.79 |
| Bra032666.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 66.67 | 66.41 |
| Bra012303.1-P | Field mustard | nucleus | 65.52 | 65.77 |
| CDY01302 | Canola | nucleus | 65.13 | 65.38 |
| CDY00413 | Canola | cytosol | 65.13 | 65.38 |
| Bra033219.1-P | Field mustard | cytosol | 22.99 | 63.16 |
| PGSC0003DMT400067022 | Potato | cytosol | 68.97 | 60.81 |
| CDY15130 | Canola | extracellular | 25.67 | 59.82 |
| VIT_02s0234g00120.t01 | Wine grape | cytosol | 55.17 | 55.6 |
| KRH01071 | Soybean | nucleus | 59.0 | 54.8 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P12070_001 | EnsemblPlants:GSMUA_Achr2T12070_001 | EnsemblPlantsGene:GSMUA_Achr2G12070_001 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom |
| ncoils:Coil | PANTHER:PTHR15350 | PANTHER:PTHR15350:SF5 | PFscan:PS50250 | SEG:seg | SMART:SM00088 |
| SMART:SM00753 | UniParc:UPI000295B144 | UniProt:M0S798 | MapMan:19.2.3.3.1.7 | : | : |
Description
COP9 signalosome complex subunit 7 [Source:GMGC_GENE;Acc:GSMUA_Achr2G12070_001]
Coordinates
chr2:+:14621644..14630010
Molecular Weight (calculated)
29846.9 Da
IEP (calculated)
5.141
GRAVY (calculated)
-0.449
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMERKQSEL IDHFVKRATA VDAAAPLADL ILEATAHPSL FAFSEILSVP DLAKLKGTQY ASSLYVLRLF ACGTWSDYKC NAGSLPALVP DQVRKLKQLT
101: VLTLAETEKV LPYDQLMEEL DVSNVRELED FLINECMYAG IVRGKLDQLR RCFEVQFAAG RDLRPEQLDN MIQTLSDWLG TSDSLLHLIQ EKIKWADIMS
201: ETNKKHKKEI EDKVEEVKKS LKADLDLRGH EESFSESGGM MDYEEDRVRP KRRRQPMHKE G
101: VLTLAETEKV LPYDQLMEEL DVSNVRELED FLINECMYAG IVRGKLDQLR RCFEVQFAAG RDLRPEQLDN MIQTLSDWLG TSDSLLHLIQ EKIKWADIMS
201: ETNKKHKKEI EDKVEEVKKS LKADLDLRGH EESFSESGGM MDYEEDRVRP KRRRQPMHKE G
001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
Arabidopsis Description
CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.