Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 85.61 | 83.18 |
| Os08t0119000-01 | Rice | cytosol | 70.0 | 67.37 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 68.29 | 66.04 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 66.83 | 64.17 |
| EES13281 | Sorghum | cytosol | 66.83 | 63.87 |
| KRH57651 | Soybean | cytosol | 65.85 | 63.83 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 66.34 | 63.7 |
| Zm00001d049652_P001 | Maize | cytosol | 65.85 | 63.53 |
| KRG94317 | Soybean | cytosol | 65.12 | 63.12 |
| Solyc02g093920.2.1 | Tomato | cytosol | 65.12 | 62.38 |
| PGSC0003DMT400052100 | Potato | cytosol | 65.12 | 62.38 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 63.41 | 61.18 |
| Zm00001d035130_P001 | Maize | cytosol | 66.1 | 58.15 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 66.1 | 55.65 |
| AT5G14250.1 | Thale cress | cytosol | 58.05 | 55.48 |
| CDX78568 | Canola | cytosol | 56.1 | 54.63 |
| Bra006246.1-P | Field mustard | cytosol | 55.61 | 54.16 |
| CDX85608 | Canola | cytosol | 55.61 | 53.65 |
| Bra023453.1-P | Field mustard | cytosol | 55.61 | 53.65 |
| CDX91076 | Canola | cytosol | 55.61 | 53.52 |
| Zm00001d028517_P001 | Maize | cytosol | 14.15 | 52.73 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 27.32 | 44.8 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 27.07 | 44.22 |
| CDX70553 | Canola | mitochondrion | 38.29 | 43.01 |
| CDY26433 | Canola | mitochondrion | 30.24 | 28.18 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.3 | InterPro:CSN3 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0008180 | EnsemblPlantsGene:GSMUA_AchrUn_randomG00740_001 |
| EnsemblPlants:GSMUA_AchrUn_randomP00740_001 | EnsemblPlants:GSMUA_AchrUn_randomT00740_001 | InterPro:IPR000717 | InterPro:IPR036388 | UniProt:M0U586 | InterPro:PCI_dom |
| PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI000295ED57 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | : | : |
Description
COP9 signalosome complex subunit 3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00740_001]
Coordinates
chrchrUn_random:-:3027165..3043289
Molecular Weight (calculated)
46064.9 Da
IEP (calculated)
6.640
GRAVY (calculated)
-0.077
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVEAVVAH IQALSGSHEE VADLHSLLKQ SEGALRSRAA RLGPFLHQLD PSAHTLGYLF LLEAYSSRPI SRELDEKILP FIVGFINSCS AEQIRLAPEK
101: FISVCKSLKD QVMQLQVPIR GITPLRTAIR KLQTSSEQLT TLHSDYLLLC LLAKFYKAGL SILDDDIFEV DQPRDHFLYC YYGGMINIGL KRFRKALGCL
201: HNVVTAPMDA LIVIAVEAYK KYILVSLILN GQVPPFPKYT SSTAQRNLKR HTQPYIDLAD CYATGTFSEL EACIQTNLEK FQSDSNVGLV KQVLSSLYKC
301: NIQRLTQTYL TLSLQDIANA SQLKTPNDAE MHVLQMIQDA EISASINQKD GMVSFHEDPE QYKICGMIEP IDSLIQRLME LSKKLSSLDE QISCDLAHLT
401: RIGKERPRLD
101: FISVCKSLKD QVMQLQVPIR GITPLRTAIR KLQTSSEQLT TLHSDYLLLC LLAKFYKAGL SILDDDIFEV DQPRDHFLYC YYGGMINIGL KRFRKALGCL
201: HNVVTAPMDA LIVIAVEAYK KYILVSLILN GQVPPFPKYT SSTAQRNLKR HTQPYIDLAD CYATGTFSEL EACIQTNLEK FQSDSNVGLV KQVLSSLYKC
301: NIQRLTQTYL TLSLQDIANA SQLKTPNDAE MHVLQMIQDA EISASINQKD GMVSFHEDPE QYKICGMIEP IDSLIQRLME LSKKLSSLDE QISCDLAHLT
401: RIGKERPRLD
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.