Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G312600.2 | Wheat | cytosol | 94.82 | 94.38 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 94.82 | 94.38 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 92.0 | 80.29 |
| Os08t0119000-01 | Rice | cytosol | 76.71 | 76.53 |
| EES13281 | Sorghum | cytosol | 73.65 | 72.96 |
| Zm00001d049652_P001 | Maize | cytosol | 72.71 | 72.71 |
| Zm00001d035130_P001 | Maize | cytosol | 72.94 | 66.52 |
| Zm00001d028517_P001 | Maize | cytosol | 16.94 | 65.45 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.18 | 63.41 |
| GSMUA_Achr11P... | Banana | cytosol | 62.59 | 63.03 |
| KRH57651 | Soybean | cytosol | 59.76 | 60.05 |
| KRG94317 | Soybean | cytosol | 59.53 | 59.81 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 58.35 | 58.49 |
| Solyc02g093920.2.1 | Tomato | cytosol | 58.35 | 57.94 |
| PGSC0003DMT400052100 | Potato | cytosol | 58.12 | 57.71 |
| Bra023453.1-P | Field mustard | cytosol | 51.06 | 51.06 |
| CDX85608 | Canola | cytosol | 50.59 | 50.59 |
| CDX91076 | Canola | cytosol | 50.59 | 50.47 |
| Bra006246.1-P | Field mustard | cytosol | 49.18 | 49.64 |
| CDX78568 | Canola | cytosol | 48.94 | 49.41 |
| AT5G14250.1 | Thale cress | cytosol | 49.41 | 48.95 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 24.71 | 41.83 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 24.47 | 41.6 |
| CDX70553 | Canola | mitochondrion | 35.29 | 41.1 |
| CDY26433 | Canola | mitochondrion | 28.47 | 27.5 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.3 | InterPro:CSN3 | ncoils:Coil | GO:GO:0000338 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0010971 |
| GO:GO:0019538 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 |
| PANTHER:PTHR10758:SF1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS7A01G315600 | EnsemblPlants:TraesCS7A01G315600.1 |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:449992947..449997473
Molecular Weight (calculated)
45350.3 Da
IEP (calculated)
6.091
GRAVY (calculated)
-0.162
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVEALVAH IQGLSGSPDE LAQLHGLLKQ ADGDALRVHS AGLLXXXXXX XXXXXXXXXX XXXDSFVSSS ANLRAHAGGD LLVTVADFLT SCSADQIRMA
101: PDKFLNVCRV LKNEVMQLNA PIRGIAPLRA AVRKIQTSSE QLTPLHAEYL MLCLLAKQYK AGLSVLEDDI FEVDQPKDLF LYCYYGAMIY IGLKKFRKAL
201: ELLHNAVTAP MSSLNAITVE AYKKYVLVSL IQSGQVPSFP KYTSSTAQRN LKNHTQIYVD LSTCYGTGSY SDLETFIQSN AEAFQTDNNF GLVKQVLSSM
301: YKRNIQRLTQ TYLTLSLEDI ASSVQLNTPK EAEMHVLRMI EDGEIHATIN QKDGMVSFNE DPEQYKSSEM VEHIDSSIQR LMALSKKLTS IDQNISCDHA
401: FLMKSGRERA RFDYDDFDSV PHKYF
101: PDKFLNVCRV LKNEVMQLNA PIRGIAPLRA AVRKIQTSSE QLTPLHAEYL MLCLLAKQYK AGLSVLEDDI FEVDQPKDLF LYCYYGAMIY IGLKKFRKAL
201: ELLHNAVTAP MSSLNAITVE AYKKYVLVSL IQSGQVPSFP KYTSSTAQRN LKNHTQIYVD LSTCYGTGSY SDLETFIQSN AEAFQTDNNF GLVKQVLSSM
301: YKRNIQRLTQ TYLTLSLEDI ASSVQLNTPK EAEMHVLRMI EDGEIHATIN QKDGMVSFNE DPEQYKSSEM VEHIDSSIQR LMALSKKLTS IDQNISCDHA
401: FLMKSGRERA RFDYDDFDSV PHKYF
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.