Factsheet for TraesCS7D01G240300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G228300.1
TraesCS2A01G504600.1
TraesCS2B01G253600.2
TraesCS2D01G239100.1
TraesCS2D01G505300.1
TraesCS4A01G041600.1
TraesCS4B01G262600.1
TraesCS4D01G262700.1
TraesCS7A01G241300.1
TraesCS7A01G315600.1
TraesCS7B01G136800.1
TraesCS7B01G216600.2
TraesCS7D01G240300.1
TraesCS7D01G312600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	TraesCS2A01G228300.1	AT1G02090.1	11742986
AT4G26430.1	TraesCS2B01G253600.2	AT1G02090.1	11742986
AT4G26430.1	TraesCS2D01G239100.1	AT1G02090.1	11742986
AT4G26430.1	TraesCS2A01G228300.1	AT1G02090.1	21798944
AT4G26430.1	TraesCS2B01G253600.2	AT1G02090.1	21798944
AT4G26430.1	TraesCS2D01G239100.1	AT1G02090.1	21798944
AT4G26430.1	TraesCS2A01G504600.1	AT1G22920.1	11742986
AT4G26430.1	TraesCS2D01G505300.1	AT1G22920.1	11742986
AT4G26430.1	TraesCS2A01G504600.1	AT1G71230.1	11742986
AT4G26430.1	TraesCS2D01G505300.1	AT1G71230.1	11742986
AT5G56280.1	TraesCS2A01G228300.1	AT1G02090.1	11701877
AT5G56280.1	TraesCS2B01G253600.2	AT1G02090.1	11701877
AT5G56280.1	TraesCS2D01G239100.1	AT1G02090.1	11701877
AT5G56280.1	TraesCS2A01G228300.1	AT1G02090.1	11742986
AT5G56280.1	TraesCS2B01G253600.2	AT1G02090.1	11742986
AT5G56280.1	TraesCS2D01G239100.1	AT1G02090.1	11742986
AT5G56280.1	TraesCS2A01G228300.1	AT1G02090.1	12615944
AT5G56280.1	TraesCS2B01G253600.2	AT1G02090.1	12615944
AT5G56280.1	TraesCS2D01G239100.1	AT1G02090.1	12615944
AT5G56280.1	TraesCS2A01G504600.1	AT1G22920.1	11701877
AT5G56280.1	TraesCS2D01G505300.1	AT1G22920.1	11701877
AT5G56280.1	TraesCS2A01G504600.1	AT1G22920.1	11742986
AT5G56280.1	TraesCS2D01G505300.1	AT1G22920.1	11742986
AT5G56280.1	TraesCS2A01G504600.1	AT1G22920.1	12615944
AT5G56280.1	TraesCS2D01G505300.1	AT1G22920.1	12615944
AT5G56280.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT5G56280.1	TraesCS2D01G505300.1	AT1G22920.1	21798944
AT5G56280.1	TraesCS2A01G504600.1	AT1G71230.1	11742986
AT5G56280.1	TraesCS2D01G505300.1	AT1G71230.1	11742986
AT5G56280.1	TraesCS7A01G315600.1	AT5G14250.1	11701877
AT5G56280.1	TraesCS7B01G216600.2	AT5G14250.1	11701877
AT5G56280.1	TraesCS7D01G312600.2	AT5G14250.1	11701877
AT5G56280.1	TraesCS7A01G315600.1	AT5G14250.1	12615944
AT5G56280.1	TraesCS7B01G216600.2	AT5G14250.1	12615944
AT5G56280.1	TraesCS7D01G312600.2	AT5G14250.1	12615944
AT5G56280.1	TraesCS4A01G041600.1	AT5G42970.1	11701877
AT5G56280.1	TraesCS4B01G262600.1	AT5G42970.1	11701877
AT5G56280.1	TraesCS4D01G262700.1	AT5G42970.1	11701877
AT5G56280.1	TraesCS4A01G041600.1	AT5G42970.1	12615944
AT5G56280.1	TraesCS4B01G262600.1	AT5G42970.1	12615944
AT5G56280.1	TraesCS4D01G262700.1	AT5G42970.1	12615944
AT5G56280.1	TraesCS7A01G241300.1	AT5G56280.1	11742986
AT5G56280.1	TraesCS7B01G136800.1	AT5G56280.1	11742986
AT5G56280.1	TraesCS7D01G240300.1	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G241300.1	Wheat	plastid	99.41	99.41
HORVU7Hr1G049190.1	Barley	plastid	99.41	99.41
TraesCS7B01G136800.1	Wheat	plastid	98.81	98.81
Os08t0500000-01	Rice	plasma membrane	81.6	83.59
Zm00001d031323_P001	Maize	extracellular	80.12	81.33
EES14305	Sorghum	plastid	79.82	81.02
Zm00001d052848_P004	Maize	plastid	80.71	79.77
GSMUA_Achr5P04140_001	Banana	plastid	72.11	78.64
VIT_19s0015g01950.t01	Wine grape	plastid	73.59	78.23
PGSC0003DMT400029338	Potato	plastid	70.62	76.53
CDY32798	Canola	plastid	71.22	76.43
CDY49389	Canola	plastid	72.11	76.42
AT5G56280.1	Thale cress	plastid	71.51	76.03
Solyc10g005660.2.1	Tomato	plastid	70.33	75.72
Bra002827.1-P	Field mustard	plastid	70.33	75.48
KRH62556	Soybean	plastid	69.73	73.9
PGSC0003DMT400056930	Potato	cytosol, plastid	24.93	73.04
KRH56376	Soybean	plastid	69.73	72.98
CDX89337	Canola	plastid	68.25	72.33
Bra026439.1-P	Field mustard	plastid	68.25	72.33
AT4G26430.1	Thale cress	plastid	67.95	72.24
CDX94336	Canola	plastid	67.95	72.01
CDY42737	Canola	plastid	66.77	70.75
Bra019106.1-P	Field mustard	plastid	66.17	70.13
CDX92773	Canola	plastid	63.5	60.8
TraesCS2D01G496100.2	Wheat	cytosol	18.99	20.65
TraesCS6D01G078000.1	Wheat	plastid	16.91	19.52
TraesCS1D01G370500.1	Wheat	cytosol	3.56	2.61

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	GO:GO:0000338	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
InterPro:MPN	InterPro:MPN_CSN6	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540
PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C	SMART:SM00232	EnsemblPlantsGene:TraesCS7D01G240300	EnsemblPlants:TraesCS7D01G240300.1	TIGR:cd08063
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:204730352..204734543

Molecular Weight (calculated)

36945.1 Da

IEP (calculated)

6.045

GRAVY (calculated)

-0.153

Length

337 amino acids

Sequence
(BLAST)

001: MSTPSDPAAS AQPPSTAATS SSGLTFKLHP LVIVNVSDHY TRVKAQASFP AEAPSPGKAQ ASCSAEGSSA PAEPPRVFGC VIGVQRGRTV EIFNSFELVL
101: DPVTGTLERA FLEKKLELYK KVFPEFYVLG WYSTGSDVQD TDILIHKALM DINESPVYLL LNPAINHSQK DLPVTIYESE LHVIDGGPQL IFVKSNYTIE
201: TVEAERISVD HVAHLKPSDG GSAATQLAAH LTGIHSAIKM LNSRVRVIQQ YLGAMQKGDI PLDNSLLRQV SSLVRRLPAM ESEKFQDDFL TEYNDTLLMT
301: YLAMFTNCSS TMNELVEKFN TTYERSPARR GGRGAFM

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.