Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 6
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G240300.1 | Wheat | golgi, unclear | 99.41 | 99.41 |
| TraesCS7A01G241300.1 | Wheat | plastid | 98.81 | 98.81 |
| TraesCS7B01G136800.1 | Wheat | plastid | 98.22 | 98.22 |
| Os08t0500000-01 | Rice | plasma membrane | 81.31 | 83.28 |
| Zm00001d031323_P001 | Maize | extracellular | 79.53 | 80.72 |
| EES14305 | Sorghum | plastid | 79.53 | 80.72 |
| Zm00001d052848_P004 | Maize | plastid | 80.42 | 79.47 |
| GSMUA_Achr5P04140_001 | Banana | plastid | 71.81 | 78.32 |
| VIT_19s0015g01950.t01 | Wine grape | plastid | 73.29 | 77.92 |
| PGSC0003DMT400029338 | Potato | plastid | 70.33 | 76.21 |
| CDY32798 | Canola | plastid | 70.92 | 76.11 |
| CDY49389 | Canola | plastid | 71.81 | 76.1 |
| AT5G56280.1 | Thale cress | plastid | 71.22 | 75.71 |
| Solyc10g005660.2.1 | Tomato | plastid | 70.03 | 75.4 |
| Bra002827.1-P | Field mustard | plastid | 70.03 | 75.16 |
| KRH62556 | Soybean | plastid | 69.73 | 73.9 |
| KRH56376 | Soybean | plastid | 69.44 | 72.67 |
| PGSC0003DMT400056930 | Potato | cytosol, plastid | 24.63 | 72.17 |
| CDX89337 | Canola | plastid | 67.95 | 72.01 |
| Bra026439.1-P | Field mustard | plastid | 67.95 | 72.01 |
| AT4G26430.1 | Thale cress | plastid | 67.66 | 71.92 |
| CDX94336 | Canola | plastid | 67.66 | 71.7 |
| CDY42737 | Canola | plastid | 66.47 | 70.44 |
| Bra019106.1-P | Field mustard | plastid | 65.88 | 69.81 |
| CDX92773 | Canola | plastid | 63.2 | 60.51 |
| HORVU2Hr1G110670.1 | Barley | cytosol, mitochondrion, plastid | 6.23 | 22.11 |
| HORVU2Hr1G110590.1 | Barley | cytosol | 18.99 | 20.65 |
| HORVU4Hr1G012380.1 | Barley | cytosol | 5.34 | 19.15 |
| HORVU6Hr1G014610.1 | Barley | plastid | 16.91 | 18.33 |
Protein Annotations
| MapMan:19.2.3.3.1.6 | Gene3D:3.40.140.10 | GO:GO:0000338 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU7Hr1G049190 | EnsemblPlants:HORVU7Hr1G049190.1 |
| InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | UniProt:M0ZB30 | InterPro:MPN | InterPro:MPN_CSN6 | PFAM:PF01398 |
| PFAM:PF13012 | PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF8 | InterPro:Rpn11/EIF3F_C | SMART:SM00232 |
| UniParc:UPI0002955263 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:171329129..171333158
Molecular Weight (calculated)
36993.1 Da
IEP (calculated)
6.045
GRAVY (calculated)
-0.168
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPSDPAAS AQPPSTAATS SSGLTFKLHP LVIVNVSDHY TRVKAQASFP AETPSPGKAQ ASCSAEGSSA PAEPPRVFGC VIGVQRGRTV EIFNSFELVL
101: DPVTGTLERA FLEKKLELYK KVFPEFYVLG WYSTGSDVQD TDILMHKALM DINESPVYLL LNPAINHSQK DLPVTIYESE LHVIDGGPQL IFVKSNYTIE
201: TVEAERISVD HVAHLKPSDG GSAATQLAAH LTGIHSAIKM LNSRVRVIQQ YLGAMQKGDI PLDNSLLRQV SSLVRRLPAM ESEKFQDDFL TEYNDTLLMT
301: YLAMFTNCSS TMNELVEKFN TTYERSPARR GGRGAFM
101: DPVTGTLERA FLEKKLELYK KVFPEFYVLG WYSTGSDVQD TDILMHKALM DINESPVYLL LNPAINHSQK DLPVTIYESE LHVIDGGPQL IFVKSNYTIE
201: TVEAERISVD HVAHLKPSDG GSAATQLAAH LTGIHSAIKM LNSRVRVIQQ YLGAMQKGDI PLDNSLLRQV SSLVRRLPAM ESEKFQDDFL TEYNDTLLMT
301: YLAMFTNCSS TMNELVEKFN TTYERSPARR GGRGAFM
001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
Arabidopsis Description
CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.