Factsheet for HORVU4Hr1G012380.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G061140.1
HORVU5Hr1G112850.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	HORVU5Hr1G061140.1	AT3G25860.1	24846764
AT5G05780.1	HORVU5Hr1G112850.3	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0661900-01	Rice	cytosol	62.77	34.71
TraesCS2D01G496100.2	Wheat	cytosol	67.02	20.32
TraesCS2B01G524100.2	Wheat	cytosol	67.02	20.32
TraesCS2A01G495800.1	Wheat	golgi, unclear	67.02	20.32
HORVU2Hr1G110590.1	Barley	cytosol	67.02	20.32
EES11600	Sorghum	cytosol	65.96	20.0
AT5G05780.1	Thale cress	cytosol	63.83	19.48
CDY14102	Canola	cytosol	63.83	19.48
CDY11340	Canola	extracellular	63.83	19.48
CDY04967	Canola	cytosol	63.83	19.48
CDX80973	Canola	cytosol, nucleus, vacuole	63.83	19.48
CDX70129	Canola	cytosol, nucleus, vacuole	63.83	19.48
Bra009133.1-P	Field mustard	cytosol	63.83	19.48
Zm00001d001966_P001	Maize	cytosol	65.96	19.44
KRH31114	Soybean	endoplasmic reticulum	63.83	19.42
KRG97770	Soybean	nucleus	63.83	19.42
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	62.77	19.16
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	62.77	19.16
VIT_08s0007g01980.t01	Wine grape	cytosol	62.77	19.03
GSMUA_Achr8P20510_001	Banana	cytosol	62.77	19.03
GSMUA_Achr9P25620_001	Banana	cytosol	62.77	18.97
CDX98863	Canola	cytosol	61.7	18.83
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	65.96	18.73
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	61.7	18.71
VIT_02s0025g01490.t01	Wine grape	cytosol	61.7	18.71
PGSC0003DMT400042160	Potato	cytosol	59.57	18.06
Solyc01g008370.2.1	Tomato	nucleus	58.51	17.74
CDY06213	Canola	cytosol	30.85	16.57
CDY17426	Canola	cytosol, nucleus, plastid	45.74	15.69
CDY04139	Canola	cytosol	46.81	15.6
Bra017408.1-P	Field mustard	cytosol	46.81	14.29
CDX70711	Canola	cytosol	17.02	12.6
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	32.98	10.37
Bra006369.1-P	Field mustard	cytosol	39.36	9.23
CDX78706	Canola	cytosol	35.11	8.4
HORVU6Hr1G014610.1	Barley	plastid	27.66	8.36
KRG89488	Soybean	cytosol	21.28	7.46
HORVU2Hr1G110670.1	Barley	cytosol, mitochondrion, plastid	7.45	7.37
HORVU7Hr1G049190.1	Barley	plastid	19.15	5.34

Protein Annotations

EnsemblPlants:HORVU4Hr1G012380.1	EnsemblPlantsGene:HORVU4Hr1G012380	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838	InterPro:JAMM/MPN+_dom	InterPro:MPN_RPN7_8
PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	PFAM:PF01398	UniParc:UPI000B47ADA5	UniProt:A0A287N934	MapMan:35.1

Description

No Description!

Coordinates

chrchr4H:-:40825826..40826683

Molecular Weight (calculated)

10896.1 Da

IEP (calculated)

6.084

GRAVY (calculated)

-0.113

Length

94 amino acids

Sequence
(BLAST)

1: IIDSIGPTVE LVIGPKRFLA VYFTSALAVP FEEDDKDPRI WFLDHNYHEA MFSMFKRINA KEHVVGWYNT GPKLKEKDLD VHALFTNDLL IRSC

Best Arabidopsis Sequence Match ( AT5G05780.2 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE NATQKSQKVF VHVSTEIAAH EVEEIGVEHL LRDVKDTTIS TLATEVTAKL
201: TALKGLDARL REIRSYLDLV IEGKLPLNHE ILYHLQDVFN LLPNLNVNEL VKAFSVKTND MMLVIYLSSL IRSVIALHNL INNKLLNKEH EKAEDSKPVA
301: IPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.