Factsheet for Bra017408.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017345.1-P
Bra025167.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	Bra017345.1-P	AT3G25860.1	24846764
AT5G05780.1	Bra025167.1-P	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04139	Canola	cytosol	75.32	82.27
Os04t0661900-01	Rice	cytosol	31.49	57.06
VIT_07s0005g03000.t01	Wine grape	nucleus	14.94	47.42
VIT_03s0017g00150.t01	Wine grape	nucleus	14.94	47.42
HORVU4Hr1G012380.1	Barley	cytosol	14.29	46.81
AT5G05780.1	Thale cress	cytosol	43.83	43.83
Bra009133.1-P	Field mustard	cytosol	43.83	43.83
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	43.51	43.51
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	43.18	43.18
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	42.86	42.58
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	40.26	41.47
KRH31114	Soybean	endoplasmic reticulum	41.56	41.42
KRG97770	Soybean	nucleus	41.56	41.42
EES11600	Sorghum	cytosol	40.91	40.65
TraesCS2B01G524100.2	Wheat	cytosol	40.26	40.0
TraesCS2A01G495800.1	Wheat	golgi, unclear	40.26	40.0
TraesCS2D01G496100.2	Wheat	cytosol	40.26	40.0
HORVU2Hr1G110590.1	Barley	cytosol	40.26	40.0
GSMUA_Achr9P25620_001	Banana	cytosol	40.26	39.87
Zm00001d001966_P001	Maize	cytosol	40.91	39.5
GSMUA_Achr8P20510_001	Banana	cytosol	39.61	39.35
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	40.91	38.07
PGSC0003DMT400042160	Potato	cytosol	37.99	37.74
Solyc01g008370.2.1	Tomato	nucleus	37.99	37.74
Bra006369.1-P	Field mustard	cytosol	41.56	31.92
KRG89488	Soybean	cytosol	18.51	21.27
Bra004995.1-P	Field mustard	plastid	19.48	20.48
Bra000157.1-P	Field mustard	plastid	19.16	20.14
Bra019106.1-P	Field mustard	plastid	16.56	16.04
Bra002827.1-P	Field mustard	plastid	16.23	15.92
Bra026439.1-P	Field mustard	plastid	15.58	15.09

Protein Annotations

Gene3D:3.30.70.330	Gene3D:3.40.140.10	MapMan:35.1	EnsemblPlantsGene:Bra017408	EnsemblPlants:Bra017408.1	EnsemblPlants:Bra017408.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005838	InterPro:IPR012677	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M4DLM7
InterPro:MPN	InterPro:MPN_RPN7_8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF01398	PFscan:PS50249	PANTHER:PTHR10540
PANTHER:PTHR10540:SF7	InterPro:RBD_domain_sf	SMART:SM00232	SUPFAM:SSF54928	UniParc:UPI00025422BC	:

Description

AT5G05780 (E=3e-053) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A)

Coordinates

chrA09:+:15064139..15065572

Molecular Weight (calculated)

33665.1 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.039

Length

308 amino acids

Sequence
(BLAST)

001: MTTTQSASRI EKVVVHPLVL RNIVDNHNRM IAKDSGKRVV GVLLGSRSSR GIVGVTNSYA VPFEEDGKDP SIWSFDRDHH EYMLRMFKGL NDKEDVVGWY
101: STCPNLREND LAVHASIFRS CSYVLNPVVL VTIDVQPHQL GTPTKAYYAV KEAFVPVSTE IAPPEVEEIG RSILVTEMTP GGDNGLVDSI EAYYLCLQNK
201: VSFSVSGYDT SLDALDLVSC LEKHFQSCGF VETIQVPRHP VTNAITDRCT TVTLSGEGAT EKALALNGSD VGGWIVSVTL LPPEISEMAS GMSAREYALR
301: YVAGTLSM

Best Arabidopsis Sequence Match ( AT5G05780.2 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE NATQKSQKVF VHVSTEIAAH EVEEIGVEHL LRDVKDTTIS TLATEVTAKL
201: TALKGLDARL REIRSYLDLV IEGKLPLNHE ILYHLQDVFN LLPNLNVNEL VKAFSVKTND MMLVIYLSSL IRSVIALHNL INNKLLNKEH EKAEDSKPVA
301: IPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.