CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 21107622
nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21107622 doi

N Ahsan, T Nakamura, S Komatsu

National Institute of Crop Science, 2-1-18 Kannondai, Tsukuba, 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90801
KRH75381

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	KRG90801	AT3G25860.1	24846764
AT5G05780.1	KRH75381	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97770	Soybean	nucleus	97.73	97.73
VIT_08s0007g01980.t01	Wine grape	cytosol	93.85	93.55
VIT_02s0025g01490.t01	Wine grape	cytosol	91.26	90.97
Solyc01g008370.2.1	Tomato	nucleus	90.94	90.65
PGSC0003DMT400042160	Potato	cytosol	90.94	90.65
CDY11340	Canola	extracellular	90.29	90.58
GSMUA_Achr9P25620_001	Banana	cytosol	90.94	90.35
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	89.97	90.26
Bra009133.1-P	Field mustard	cytosol	89.97	90.26
CDX80973	Canola	cytosol, nucleus, vacuole	89.97	90.26
AT5G05780.1	Thale cress	cytosol	89.64	89.94
CDY14102	Canola	cytosol	89.64	89.94
CDY04967	Canola	cytosol	89.64	89.94
CDX70129	Canola	cytosol, nucleus, vacuole	89.64	89.94
GSMUA_Achr8P20510_001	Banana	cytosol	89.97	89.68
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	89.32	89.61
CDX98863	Canola	cytosol	89.0	89.29
EES11600	Sorghum	cytosol	89.32	89.03
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	89.0	88.71
TraesCS2D01G496100.2	Wheat	cytosol	88.67	88.39
TraesCS2B01G524100.2	Wheat	cytosol	88.67	88.39
HORVU2Hr1G110590.1	Barley	cytosol	88.67	88.39
TraesCS2A01G495800.1	Wheat	golgi, unclear	88.67	88.39
Zm00001d001966_P001	Maize	cytosol	89.32	86.52
Os04t0661900-01	Rice	cytosol	43.69	79.41
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	84.79	79.15
HORVU4Hr1G012380.1	Barley	cytosol	19.42	63.83
KRG89488	Soybean	cytosol	45.31	52.24
CDY17426	Canola	cytosol, nucleus, plastid	39.48	44.53
CDY04139	Canola	cytosol	40.13	43.97
Bra017408.1-P	Field mustard	cytosol	41.42	41.56
CDX70711	Canola	cytosol	16.18	39.37
CDY06213	Canola	cytosol	19.74	34.86
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	31.07	32.11
KRH14986	Soybean	endoplasmic reticulum	28.16	30.1
KRH73154	Soybean	endoplasmic reticulum	27.51	29.41
KRG97767	Soybean	endoplasmic reticulum	26.21	28.03
Bra006369.1-P	Field mustard	cytosol	36.25	27.93
KRH31118	Soybean	endoplasmic reticulum	25.89	27.78
CDX78706	Canola	cytosol	34.95	27.48
KRH62556	Soybean	plastid	22.65	22.01
KRH56376	Soybean	plastid	22.33	21.43

Protein Annotations

EntrezGene:100790393	MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	EMBL:ACUP02007123	EnsemblPlantsGene:GLYMA_11G227700	GO:GO:0000502
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005838	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	UniProt:I1LMP2	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	EnsemblPlants:KRH31114	ProteinID:KRH31114
ProteinID:KRH31114.1	MEROPS:M67.973	InterPro:MPN	InterPro:MPN_RPN7_8	PFAM:PF01398	PFAM:PF13012
PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI000233D2A1

Description

hypothetical protein

Coordinates

chr11:-:32276438..32280260

Molecular Weight (calculated)

34833.0 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.101

Length

309 amino acids

Sequence
(BLAST)

001: MDVIKTQQIS SRPIEKVVVH PLVLLSIVDN YNRVAKDTRK RVVGVLLGSS FKGTVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFSMFK RINAKEHVVG
101: WYSTGPKLRE NDLDIHGLFN DYVPNPVLVI IDVEPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVS
201: AKLTALKGLD ARLKEIRSYL DLVIDGKLPL NHEILYHLQD VFNLLPNLNV ADLIKAFAVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHERAEDSK
301: TVTVPSAAA

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.