Factsheet for VIT_02s0025g01490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g01980.t01	Wine grape	cytosol	97.1	97.1
KRH31114	Soybean	endoplasmic reticulum	90.97	91.26
KRG97770	Soybean	nucleus	90.65	90.94
GSMUA_Achr8P20510_001	Banana	cytosol	90.65	90.65
PGSC0003DMT400042160	Potato	cytosol	90.65	90.65
GSMUA_Achr9P25620_001	Banana	cytosol	90.32	90.03
Solyc01g008370.2.1	Tomato	nucleus	90.0	90.0
EES11600	Sorghum	cytosol	87.74	87.74
TraesCS2A01G495800.1	Wheat	golgi, unclear	87.74	87.74
TraesCS2B01G524100.2	Wheat	cytosol	87.74	87.74
TraesCS2D01G496100.2	Wheat	cytosol	87.74	87.74
HORVU2Hr1G110590.1	Barley	cytosol	87.42	87.42
Zm00001d001966_P001	Maize	cytosol	87.74	85.27
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	82.9	77.64
Os04t0661900-01	Rice	cytosol	42.26	77.06
VIT_07s0005g03000.t01	Wine grape	nucleus	22.26	71.13
VIT_03s0017g00150.t01	Wine grape	nucleus	21.61	69.07
HORVU4Hr1G012380.1	Barley	cytosol	18.71	61.7
KRG89488	Soybean	cytosol	41.29	47.76
VIT_13s0019g03470.t01	Wine grape	cytosol	26.77	29.12
VIT_19s0015g01950.t01	Wine grape	plastid	21.61	21.14

Protein Annotations

EntrezGene:100258173	wikigene:100258173	MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	ProteinID:CBI34487	ProteinID:CBI34487.3
UniProt:D7TVG2	EMBL:FN596251	GO:GO:0000502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
EntrezGene:LOC100258173	wikigene:LOC100258173	MEROPS:M67.973	InterPro:MPN	InterPro:MPN_RPN7_8	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:Rpn11/EIF3F_C	SMART:SM00232
TIGR:TC67909	UniParc:UPI00015CD535	ArrayExpress:VIT_02s0025g01490	EnsemblPlantsGene:VIT_02s0025g01490	EnsemblPlants:VIT_02s0025g01490.t01	unigene:Vvi.8506
RefSeq:XP_002269668	RefSeq:XP_002269668.1	:	:	:	:

Description

No Description!

Coordinates

chr2:+:1446671..1451478

Molecular Weight (calculated)

34915.2 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.105

Length

310 amino acids

Sequence
(BLAST)

001: MDVIKTQQIS SRPIEKVIVH PLVLLSIVDN YNRVAKDTHK RVIGVLLGSS FKGTVDVTNS YAVPFEEDDK DPSICFLDHN YHESMFSMFK RINAKEHVVG
101: WYSTGPKLRE NDLDIHRLFH EYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHIPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: GKLAALKGLD ARLREIRGYL DVVVDEKLPL NHEILYHLQD VFNLLPNLNV AELIKAFAVK TNDMMLVIYL SSLTRSVIAL HNLINNKMLN KEHEKAEDAK
301: PAAVPAIAGS

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.