Factsheet for VIT_08s0007g01980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g01490.t01	Wine grape	cytosol	97.1	97.1
KRH31114	Soybean	endoplasmic reticulum	93.55	93.85
KRG97770	Soybean	nucleus	93.23	93.53
GSMUA_Achr8P20510_001	Banana	cytosol	92.9	92.9
Solyc01g008370.2.1	Tomato	nucleus	92.58	92.58
PGSC0003DMT400042160	Potato	cytosol	92.58	92.58
GSMUA_Achr9P25620_001	Banana	cytosol	92.58	92.28
EES11600	Sorghum	cytosol	89.68	89.68
TraesCS2A01G495800.1	Wheat	golgi, unclear	89.68	89.68
TraesCS2B01G524100.2	Wheat	cytosol	89.68	89.68
TraesCS2D01G496100.2	Wheat	cytosol	89.68	89.68
HORVU2Hr1G110590.1	Barley	cytosol	89.35	89.35
Zm00001d001966_P001	Maize	cytosol	89.68	87.15
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	84.84	79.46
Os04t0661900-01	Rice	cytosol	42.9	78.24
VIT_07s0005g03000.t01	Wine grape	nucleus	23.55	75.26
VIT_03s0017g00150.t01	Wine grape	nucleus	22.9	73.2
HORVU4Hr1G012380.1	Barley	cytosol	19.03	62.77
KRG89488	Soybean	cytosol	42.9	49.63
VIT_13s0019g03470.t01	Wine grape	cytosol	26.45	28.77
VIT_19s0015g01950.t01	Wine grape	plastid	21.61	21.14

Protein Annotations

EntrezGene:100247677	wikigene:100247677	MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	ProteinID:CBI30417	ProteinID:CBI30417.3
UniProt:D7THA1	EMBL:FN595991	GO:GO:0000502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
EntrezGene:LOC100247677	wikigene:LOC100247677	MEROPS:M67.973	InterPro:MPN	InterPro:MPN_RPN7_8	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:Rpn11/EIF3F_C	SMART:SM00232
TIGR:TC52356	UniParc:UPI00015C98DE	ArrayExpress:VIT_08s0007g01980	EnsemblPlantsGene:VIT_08s0007g01980	EnsemblPlants:VIT_08s0007g01980.t01	unigene:Vvi.1252
RefSeq:XP_002278975	RefSeq:XP_002278975.1	:	:	:	:

Description

No Description!

Coordinates

chr8:-:16034660..16040005

Molecular Weight (calculated)

34830.2 Da

IEP (calculated)

6.452

GRAVY (calculated)

-0.084

Length

310 amino acids

Sequence
(BLAST)

001: MDVIKTQQIS SRPIEKVIVH PLVLLSIVDN YNRVAKDTRK RVIGVLLGSS FKGTVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFSMFK RINAKEHVVG
101: WYSTGPKLRE NDLDIHGLFH DYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: GKLAALKGLD ARLREIRGYL DLVVDGKLPL NHEILYHLQD VFNLLPNLNV AELIKAFAVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHEKAEDAK
301: PAAVPAVAGS

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.