CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, vacuole
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11340	Canola	extracellular	99.68	99.68
CDX70129	Canola	cytosol, nucleus, vacuole	99.35	99.35
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	99.35	99.35
CDY04967	Canola	cytosol	99.03	99.03
CDY14102	Canola	cytosol	99.03	99.03
CDX98863	Canola	cytosol	98.38	98.38
EES11600	Sorghum	cytosol	91.56	90.97
HORVU2Hr1G110590.1	Barley	cytosol	90.91	90.32
KRH31114	Soybean	endoplasmic reticulum	90.26	89.97
TraesCS2B01G524100.2	Wheat	cytosol	90.26	89.68
TraesCS2A01G495800.1	Wheat	golgi, unclear	90.26	89.68
TraesCS2D01G496100.2	Wheat	cytosol	90.26	89.68
KRG97770	Soybean	nucleus	89.61	89.32
GSMUA_Achr9P25620_001	Banana	cytosol	89.29	88.42
Zm00001d001966_P001	Maize	cytosol	91.56	88.4
Solyc01g008370.2.1	Tomato	nucleus	88.31	87.74
PGSC0003DMT400042160	Potato	cytosol	88.31	87.74
GSMUA_Achr8P20510_001	Banana	cytosol	87.99	87.42
Os04t0661900-01	Rice	cytosol	44.81	81.18
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	86.69	80.66
VIT_07s0005g03000.t01	Wine grape	nucleus	21.75	69.07
VIT_03s0017g00150.t01	Wine grape	nucleus	21.1	67.01
HORVU4Hr1G012380.1	Barley	cytosol	19.48	63.83
KRG89488	Soybean	cytosol	42.53	48.88
CDY04139	Canola	cytosol	42.86	46.81
CDY17426	Canola	cytosol, nucleus, plastid	41.56	46.72
CDX70711	Canola	cytosol	17.21	41.73
CDY06213	Canola	cytosol	19.81	34.86
CDX78706	Canola	cytosol	38.31	30.03
CDX74814	Canola	cytosol, plastid	23.7	25.26
CDY65775	Canola	cytosol, plastid	23.38	24.91
CDY24934	Canola	plastid	23.05	24.23
CDY60991	Canola	plastid	22.73	23.89
CDY32798	Canola	plastid	22.08	21.66
CDX94336	Canola	plastid	22.08	21.38
CDY49389	Canola	plastid	22.08	21.38
CDX89337	Canola	plastid	21.75	21.07
CDY42737	Canola	plastid	21.43	20.75
CDX92773	Canola	plastid	22.73	19.89

Protein Annotations

MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	EnsemblPlants:CDX80973	ProteinID:CDX80973	ProteinID:CDX80973.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838
EnsemblPlantsGene:GSBRNA2T00134397001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	InterPro:MPN_RPN7_8	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:Rpn11/EIF3F_C	SMART:SM00232
UniParc:UPI0004EB77F6	SEG:seg	:	:	:	:

Description

BnaC03g02270D

Coordinates

chrLK031823:+:1081516..1083830

Molecular Weight (calculated)

34799.0 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.103

Length

308 amino acids

Sequence
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSRK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.