CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 6
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31118	Soybean	endoplasmic reticulum	93.43	93.75
KRH73154	Soybean	endoplasmic reticulum	84.78	84.78
KRH14986	Soybean	endoplasmic reticulum	84.78	84.78
VIT_13s0019g03470.t01	Wine grape	cytosol	78.55	79.65
Solyc11g013440.1.1	Tomato	plastid	75.78	76.84
CDX74814	Canola	cytosol, plastid	76.47	76.47
PGSC0003DMT400069899	Potato	cytosol	74.05	75.09
CDY65775	Canola	cytosol, plastid	75.09	75.09
Bra004995.1-P	Field mustard	plastid	75.43	74.4
Solyc05g052690.2.1	Tomato	cytosol	73.36	74.39
CDY24934	Canola	plastid	75.09	74.06
Bra000157.1-P	Field mustard	plastid	74.74	73.72
CDY60991	Canola	plastid	74.39	73.38
Os05t0104800-01	Rice	nucleus	71.28	72.54
AT2G39990.1	Thale cress	plastid	73.36	72.35
Zm00001d011100_P002	Maize	plastid	71.63	72.13
KXG22419	Sorghum	plastid	71.63	72.13
TraesCS6D01G078000.1	Wheat	plastid	69.9	69.18
TraesCS6A01G090300.1	Wheat	golgi	69.9	69.18
TraesCS6B01G112400.2	Wheat	plastid	69.55	68.84
PGSC0003DMT400071416	Potato	cytosol	67.47	67.47
Zm00001d035752_P002	Maize	plastid	70.24	66.56
GSMUA_Achr9P28480_001	Banana	cytosol	67.47	66.55
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	67.13	66.21
HORVU6Hr1G014610.1	Barley	plastid	69.55	64.63
GSMUA_Achr2P16060_001	Banana	cytosol	26.64	62.6
GSMUA_Achr2P16050_001	Banana	cytosol	24.22	60.34
KRH31114	Soybean	endoplasmic reticulum	28.03	26.21
KRG97770	Soybean	nucleus	28.03	26.21
KRH56376	Soybean	plastid	24.91	22.36
KRH62556	Soybean	plastid	24.57	22.33
KRG89488	Soybean	cytosol	12.46	13.43

Protein Annotations

EntrezGene:100811797	MapMan:17.4.1.3.6	Gene3D:3.40.140.10	EMBL:ACUP02010814	EMBL:BT095151	UniProt:C6TC72
EnsemblPlantsGene:GLYMA_18G029500	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	GO:GO:0071541	InterPro:IPR037518
InterPro:JAMM/MPN+_dom	EnsemblPlants:KRG97767	ProteinID:KRG97767	ProteinID:KRG97767.1	MEROPS:M67.974	HAMAP:MF_03005
InterPro:MPN	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6
InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI0001B15F5D	InterPro:eIF3f	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:2232819..2236403

Molecular Weight (calculated)

31721.0 Da

IEP (calculated)

4.988

GRAVY (calculated)

0.019

Length

289 amino acids

Sequence
(BLAST)

001: MAASDRTVLQ FSSSSSSSSQ ILSAKVHPLV IFNICDCYVR RPDQADRVIG TLLGSVLPDG TVDIRNSYAV PHNESIEQVA LDIEYHHNML ISHQKVNPKE
101: IIVGWYSTGL GVTGGSALIH EFYSREVPNP IHLTVDTGFT NGAGTIKAYV SNNLSLGERQ IAAQFQEIPL DLRMVEAERI GFDMLKATAV DKIPSDLEGM
201: EASMQHLLVL IDDIYKYVDD VVEGRVAPDN KIGRFISEAV GSLPKLSPSV FDKLVNDSLQ DHLLLLYLSS ITRTQLSLAE KLNTAAQIL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.