Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G090300.1 | Wheat | golgi | 86.17 | 91.78 |
| TraesCS6D01G078000.1 | Wheat | plastid | 85.85 | 91.44 |
| TraesCS6B01G112400.2 | Wheat | plastid | 85.85 | 91.44 |
| KXG22419 | Sorghum | plastid | 77.17 | 83.62 |
| Os05t0104800-01 | Rice | nucleus | 76.21 | 83.45 |
| Zm00001d011100_P002 | Maize | plastid | 75.56 | 81.88 |
| Zm00001d035752_P002 | Maize | plastid | 74.6 | 76.07 |
| KRG97767 | Soybean | endoplasmic reticulum | 64.63 | 69.55 |
| VIT_13s0019g03470.t01 | Wine grape | cytosol | 63.34 | 69.12 |
| Solyc05g052690.2.1 | Tomato | cytosol | 63.34 | 69.12 |
| PGSC0003DMT400069899 | Potato | cytosol | 63.34 | 69.12 |
| GSMUA_Achr9P28480_001 | Banana | cytosol | 64.63 | 68.6 |
| KRH31118 | Soybean | endoplasmic reticulum | 63.02 | 68.06 |
| KRH73154 | Soybean | endoplasmic reticulum | 62.7 | 67.47 |
| Solyc11g013440.1.1 | Tomato | plastid | 61.74 | 67.37 |
| GSMUA_Achr6P05250_001 | Banana | cytosol, plastid | 63.02 | 66.89 |
| KRH14986 | Soybean | endoplasmic reticulum | 62.06 | 66.78 |
| CDX74814 | Canola | cytosol, plastid | 59.49 | 64.01 |
| Bra004995.1-P | Field mustard | plastid | 59.81 | 63.48 |
| AT2G39990.1 | Thale cress | plastid | 59.81 | 63.48 |
| Bra000157.1-P | Field mustard | plastid | 59.49 | 63.14 |
| CDY24934 | Canola | plastid | 59.49 | 63.14 |
| CDY60991 | Canola | plastid | 59.16 | 62.8 |
| CDY65775 | Canola | cytosol, plastid | 58.2 | 62.63 |
| GSMUA_Achr2P16060_001 | Banana | cytosol | 24.12 | 60.98 |
| GSMUA_Achr2P16050_001 | Banana | cytosol | 22.51 | 60.34 |
| PGSC0003DMT400071416 | Potato | cytosol | 54.66 | 58.82 |
| HORVU4Hr1G012380.1 | Barley | cytosol | 8.36 | 27.66 |
| HORVU2Hr1G110590.1 | Barley | cytosol | 22.83 | 22.9 |
| HORVU7Hr1G049190.1 | Barley | plastid | 18.33 | 16.91 |
| HORVU2Hr1G110670.1 | Barley | cytosol, mitochondrion, plastid | 4.5 | 14.74 |
Protein Annotations
| MapMan:17.4.1.3.6 | Gene3D:3.40.140.10 | UniProt:A0A287TEA2 | GO:GO:0000003 | GO:GO:0001732 | GO:GO:0002183 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0007275 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009744 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009846 | GO:GO:0009856 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016282 |
| GO:GO:0019538 | GO:GO:0033290 | EnsemblPlantsGene:HORVU6Hr1G014610 | EnsemblPlants:HORVU6Hr1G014610.1 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom |
| HAMAP:MF_03005 | InterPro:MPN | PFAM:PF01398 | PFAM:PF13012 | PFscan:PS50249 | PANTHER:PTHR10540 |
| PANTHER:PTHR10540:SF6 | InterPro:Rpn11/EIF3F_C | SMART:SM00232 | UniParc:UPI000B47739A | InterPro:eIF3f | SEG:seg |
Description
Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/TrEMBL;Acc:A0A287TEA2]
Coordinates
chrchr6H:+:31123674..31201260
Molecular Weight (calculated)
33849.2 Da
IEP (calculated)
5.604
GRAVY (calculated)
-0.094
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: STTARRRSSP FASPPSPSTM AAPETSARGA GPALLFPSSS SSSSSARVEA VVVFTICDSF VRRPDQAERV IGTLLGSVLP DGTVHVRNAY VVPHSESADQ
101: VALDIEYHHN MYASHQKVNP KEVLVGWFST GFGVSGGSTL IHEFYSREVQ SPIHLTVDTG FTMGEASIKA YVSSNLSLGD RHLAAQFQEI PLDLKMLDAE
201: KVGFEMLKST MVEKLPNDLE GMESSMQKLY ALIDEIYKYV DDVVEARVAP DNKIGRFIAD TVSSMPKLSP ASFDRLFNDK IQDNLALVYL SSITRTQIAV
301: AEKLNTAAQV L
101: VALDIEYHHN MYASHQKVNP KEVLVGWFST GFGVSGGSTL IHEFYSREVQ SPIHLTVDTG FTMGEASIKA YVSSNLSLGD RHLAAQFQEI PLDLKMLDAE
201: KVGFEMLKST MVEKLPNDLE GMESSMQKLY ALIDEIYKYV DDVVEARVAP DNKIGRFIAD TVSSMPKLSP ASFDRLFNDK IQDNLALVYL SSITRTQIAV
301: AEKLNTAAQV L
001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML
Arabidopsis Description
TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.