Factsheet for Solyc11g013440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 4
plastid 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052690.2.1	Tomato	cytosol	87.37	87.37
PGSC0003DMT400071416	Potato	cytosol	88.42	87.2
VIT_13s0019g03470.t01	Wine grape	cytosol	80.35	80.35
KRH31118	Soybean	endoplasmic reticulum	77.54	76.74
KRG97767	Soybean	endoplasmic reticulum	76.84	75.78
KRH14986	Soybean	endoplasmic reticulum	74.39	73.36
KRH73154	Soybean	endoplasmic reticulum	74.04	73.01
CDY24934	Canola	plastid	72.28	70.31
CDY65775	Canola	cytosol, plastid	71.23	70.24
Bra000157.1-P	Field mustard	plastid	71.93	69.97
CDY60991	Canola	plastid	71.93	69.97
Bra004995.1-P	Field mustard	plastid	71.93	69.97
CDX74814	Canola	cytosol, plastid	70.88	69.9
Os05t0104800-01	Rice	nucleus	69.12	69.37
KXG22419	Sorghum	plastid	69.82	69.34
Zm00001d011100_P002	Maize	plastid	68.77	68.29
AT2G39990.1	Thale cress	plastid	70.18	68.26
GSMUA_Achr9P28480_001	Banana	cytosol	69.47	67.58
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	68.77	66.89
TraesCS6A01G090300.1	Wheat	golgi	68.42	66.78
TraesCS6D01G078000.1	Wheat	plastid	68.42	66.78
TraesCS6B01G112400.2	Wheat	plastid	68.07	66.44
Zm00001d035752_P002	Maize	plastid	68.77	64.26
GSMUA_Achr2P16060_001	Banana	cytosol	27.72	64.23
HORVU6Hr1G014610.1	Barley	plastid	67.37	61.74
GSMUA_Achr2P16050_001	Banana	cytosol	24.91	61.21
Solyc01g008370.2.1	Tomato	nucleus	28.42	26.13
Solyc10g005660.2.1	Tomato	plastid	24.91	22.68

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	GO:GO:0071541
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:K4D6E8	MEROPS:M67.975	HAMAP:MF_03005	InterPro:MPN
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C
SMART:SM00232	EnsemblPlantsGene:Solyc11g013440.1	EnsemblPlants:Solyc11g013440.1.1	UniParc:UPI000276A441	InterPro:eIF3f	SEG:seg

Description

Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/TrEMBL;Acc:K4D6E8]

Coordinates

chr11:+:6453735..6462143

Molecular Weight (calculated)

31388.3 Da

IEP (calculated)

4.624

GRAVY (calculated)

-0.039

Length

285 amino acids

Sequence
(BLAST)

001: MASSDHTILQ FSPSSTGISA KVHPLVIFNI CDCFVRRPDQ ADRIIGTLLG SVLPDGTVDI RNSYAVPHSE SQDQVALDID YHHNMLSSHQ KVNPKEVIVG
101: WFSTGFGVTG GSALIHEFFS RETTNPIHLT IDTGFTNGEA SVKGFVSVHL SIGDQQLAAQ FQEIPLDLRM VEAERIGFDI LKTTAVEKLP NDLEGMEASM
201: QRLLALIDDI YKYVDDVVEG RVPQDNKIGR FISDTVASLP KLSSQDFDKL VNDGLEDQLL LLYLASLTRT QLSFAEKLNT AAQIL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.