Factsheet for HORVU5Hr1G061140.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G027540.1
HORVU5Hr1G038090.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	HORVU5Hr1G038090.3	AT1G34430.1	21798944
AT3G25860.1	HORVU3Hr1G027540.1	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G212800.1	Wheat	plastid	95.9	95.9
TraesCS5B01G204800.1	Wheat	plastid	95.46	95.46
TraesCS3B01G372900.1	Wheat	plastid	92.87	94.71
TraesCS5A01G206600.2	Wheat	plastid	88.55	88.36
OQU89472	Sorghum	plastid	80.56	81.26
Zm00001d020426_P001	Maize	plastid	78.62	80.18
Os09t0408600-01	Rice	plastid	81.43	75.25
GSMUA_Achr3P07350_001	Banana	cytosol	65.01	73.96
CDY39183	Canola	plastid	66.74	65.47
Bra017345.1-P	Field mustard	plastid	67.6	65.34
CDY04184	Canola	plastid	67.39	65.14
Bra025167.1-P	Field mustard	plastid	66.95	64.99
CDX83563	Canola	plastid	66.52	64.71
CDY13593	Canola	plastid	66.52	64.57
Solyc05g009530.2.1	Tomato	plastid	63.93	64.49
AT3G25860.1	Thale cress	plastid	66.74	64.38
VIT_01s0011g03380.t01	Wine grape	plastid	67.39	63.93
KRH75381	Soybean	plastid	58.1	63.0
PGSC0003DMT400033754	Potato	plastid	62.42	62.83
KRG90801	Soybean	endoplasmic reticulum, nucleus	67.17	61.46
HORVU5Hr1G112850.3	Barley	plastid	70.84	61.19
HORVU5Hr1G038090.3	Barley	plastid	44.49	47.8
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	28.51	24.72
HORVU7Hr1G072650.1	Barley	mitochondrion	26.13	23.09
HORVU7Hr1G001330.9	Barley	plastid	28.08	22.53
HORVU2Hr1G012440.1	Barley	cytosol	20.95	22.0
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	19.65	19.12

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
EMBL:AK354103	EMBL:AK362954	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ncoils:Coil	InterPro:E3-bd_dom_sf
UniProt:F2CR51	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
GO:GO:0016746	EnsemblPlantsGene:HORVU5Hr1G061140	EnsemblPlants:HORVU5Hr1G061140.1	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF67	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI000200455C	SEG:seg	:	:

Description

Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F2CR51]

Coordinates

chrchr5H:-:478392552..478396471

Molecular Weight (calculated)

48393.5 Da

IEP (calculated)

9.596

GRAVY (calculated)

0.040

Length

463 amino acids

Sequence
(BLAST)

001: MASLASLSIY TVPRRAGRAD SVQTPRRRRM AVVRAKVREI FMPALSSTMT EGRIVSWTTA EGDRVSKGDP VVVVESDKAD MDVETFHDGI IAAVLVPAGG
101: TAPVGAPIAL LAESEEDVAL AQARAQSLSK AQGEETPPPH AAATAPPTIA PAPAPVTAPT NGIATPHAKK LAKQHGVDIS NVVGTGPNGR ITAADVEAAA
201: GIQPKPKAAP PPPPAAPPAP PAGTPSVGAV RQPAVLPPVP GATVVPFTSM QSAVSRNMVE SLSVPTFRVG YAIKTDKLDA LYEKVKLKGV TKTLLLVKAA
301: GMALAQHPVV NASCRDGKSF SYNNSINVAV AVAIEGGLLT PVLEDVDKLD IYLLAQKWRA LLKKTRMKQL QPNEYNSGTF SLSNLGMFGV DRFDAILPPG
401: QGAIMAVGAS RPTVIADKDG FFSIKNEMLV NVTADHRIIY GADLAAFLQT FAKIVEDPES LTL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.