Factsheet for HORVU5Hr1G038090.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G105520.1
HORVU4Hr1G003940.2
HORVU4Hr1G053940.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	HORVU4Hr1G053940.2	AT2G47400.1	21798944
AT1G34430.1	HORVU2Hr1G105520.1	AT3G17668.1	21798944
AT1G34430.1	HORVU4Hr1G003940.2	AT3G18140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G126000.1	Wheat	cytosol	67.52	71.32
TraesCS5B01G116300.1	Wheat	golgi, unclear	75.17	70.59
TraesCS5A01G119600.1	Wheat	plastid	73.55	69.52
Zm00001d023606_P005	Maize	plastid	69.37	65.43
OQU78843	Sorghum	plastid	68.91	64.85
Os12t0182200-01	Rice	plastid	67.29	62.1
KRG91819	Soybean	endoplasmic reticulum, nucleus	55.45	51.4
KRH34962	Soybean	plastid	55.92	51.39
Solyc11g017250.1.1	Tomato	plastid	54.52	50.21
VIT_18s0072g01000.t01	Wine grape	plastid	54.99	49.69
PGSC0003DMT400023831	Potato	plastid	53.36	49.57
Zm00001d041839_P001	Maize	plastid	66.82	48.57
AT1G34430.1	Thale cress	plastid	51.74	47.96
HORVU5Hr1G061140.1	Barley	plastid	47.8	44.49
HORVU5Hr1G112850.3	Barley	plastid	51.74	41.6
GSMUA_Achr3P17420_001	Banana	cytosol	20.19	34.94
CDY34925	Canola	mitochondrion	10.21	17.12
Bra040295.1-P	Field mustard	mitochondrion	10.21	17.12
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	20.88	16.85
HORVU7Hr1G001330.9	Barley	plastid	22.51	16.81
HORVU7Hr1G072650.1	Barley	mitochondrion	20.42	16.79
HORVU2Hr1G012440.1	Barley	cytosol	13.92	13.61
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	12.53	11.34
CDY69187	Canola	cytosol, nucleus	0.46	0.32
CDY17299	Canola	cytosol, plastid	0.46	0.3
TraesCS5D01G125900.1	Wheat	plastid	0.0	0.0

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
UniProt:A0A287QWA1	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	EnsemblPlantsGene:HORVU5Hr1G038090	EnsemblPlants:HORVU5Hr1G038090.3
InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151
PANTHER:PTHR23151:SF61	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI000B47A0D6
SEG:seg	:	:	:	:	:

Description

Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A287QWA1]

Coordinates

chrchr5H:-:275038105..275051381

Molecular Weight (calculated)

44287.0 Da

IEP (calculated)

9.921

GRAVY (calculated)

-0.077

Length

431 amino acids

Sequence
(BLAST)

001: MATWHLGLLL IRLKENPKHG GNSDQPKPPA SSSSANPPRL RYSQGGSSSG SNNNSKGTKG QLSQALLPSS PPPTPPVPAM AGFLHLHSTL LPSASLLRQR
101: GGGHAVPRRR RACRVEAKIR EIFMPALSST MTEGKIVAWN AAEGDRLAKG DPVVVVESDK ADMDVETFHD GFLAAVLVPA GESAPVGSAI ALLAESEEEI
201: PLARSQAANF SSSAASPPAP QETVAQEASP APPPPPPPAP VAVSAPAPPS SATQGGARVV ASPYAKKLAK ELSVDLFAVT GSGPGGRVVA KDVEAAAAAP
301: KKAAPLAAAR PDVPLGSTVP FTTMQGAVSK NMVESLAVPA FRVGYTITTD ALDALYKKIK AKGVTMTALL AKATAMALVQ HPVVNSSCRD GQSFTYNSSI
401: NIAVAVAIDG GLITPVLQDA DKLDIYSLSR K

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.