Factsheet for GSMUA_Achr3P17420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P13010_001
GSMUA_Achr2P18190_001
GSMUA_Achr8P10530_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	GSMUA_Achr11P...	AT2G47400.1	21798944
AT1G34430.1	GSMUA_Achr11P...	AT2G47400.1	21798944
AT1G34430.1	GSMUA_Achr1P13010_001	AT2G47400.1	21798944
AT1G34430.1	GSMUA_Achr8P10530_001	AT2G47400.1	21798944
AT1G34430.1	GSMUA_Achr2P18190_001	AT3G17668.1	21798944
AT1G34430.1	GSMUA_Achr10P...	AT3G18140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P08540_001	Banana	cytosol	53.82	56.07
TraesCS5D01G126000.1	Wheat	cytosol	61.85	37.75
CDY12039	Canola	plastid	64.66	35.78
Bra028057.1-P	Field mustard	plastid	64.66	35.38
CDY03145	Canola	plastid	64.66	35.31
VIT_18s0072g01000.t01	Wine grape	plastid	67.07	35.01
AT1G34430.1	Thale cress	plastid	64.66	34.62
KRG91819	Soybean	endoplasmic reticulum, nucleus	64.26	34.41
GSMUA_Achr3P07350_001	Banana	cytosol	55.82	34.15
Zm00001d023606_P005	Maize	plastid	62.65	34.14
KRH34962	Soybean	plastid	64.26	34.12
OQU78843	Sorghum	plastid	62.25	33.84
TraesCS5A01G119600.1	Wheat	plastid	61.85	33.77
TraesCS5B01G116300.1	Wheat	golgi, unclear	61.45	33.33
Os12t0182200-01	Rice	plastid	60.64	32.33
Zm00001d041839_P001	Maize	plastid	62.25	26.14
GSMUA_Achr9P08550_001	Banana	plastid	13.25	23.57
HORVU5Hr1G038090.3	Barley	plastid	34.94	20.19
GSMUA_AchrUn_...	Banana	mitochondrion	25.7	12.93
GSMUA_AchrUn_...	Banana	mitochondrion	19.68	10.84
GSMUA_Achr3P18670_001	Banana	mitochondrion	19.68	10.84
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	26.91	10.55
GSMUA_Achr9P01190_001	Banana	cytosol	20.48	10.26
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	3.21	7.92
GSMUA_Achr10P...	Banana	mitochondrion	16.87	7.91
TraesCS5D01G125900.1	Wheat	plastid	1.61	1.31

Protein Annotations

InterPro:2-oxoacid_DH_actylTfrase	Gene3D:3.30.559.10	MapMan:50.2.3	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016746
GO:GO:0019904	GO:GO:0022626	EnsemblPlantsGene:GSMUA_Achr3G17420_001	EnsemblPlants:GSMUA_Achr3P17420_001	EnsemblPlants:GSMUA_Achr3T17420_001	InterPro:IPR023213
UniProt:M0SFF8	PFAM:PF00198	PANTHER:PTHR23151	PANTHER:PTHR23151:SF61	SUPFAM:SSF52777	TMHMM:TMhelix
UniParc:UPI000296E8CF	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G17420_001]

Coordinates

chr3:-:19018257..19021670

Molecular Weight (calculated)

26874.5 Da

IEP (calculated)

6.919

GRAVY (calculated)

0.158

Length

249 amino acids

Sequence
(BLAST)

001: MDVETFYDGY LAAIMVEEGA VAPVGSANAL LADGISIGEV SYFSSHRIGH CGSIHHNAGC CYRKHGRLPL TSDVLGGYTI TTNVLDDLYK KTKSKGCHHD
101: CIASKGYCCC RDGKSFIYNS SINIAVAVAI DGGLITPVLQ GADEVDIYSL SRKWKELVDK GRPKQLQPHE YNTGTFTLSN LGMFGVFDAI LPPGIGAIMA
201: VGASQPTVVA TEDGRISLKS QMQVNLTLQT VTLLWILLTI LKLFSLAYY

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.