Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G126000.1 | Wheat | cytosol | 4.26 | 3.19 |
| TraesCS5D01G490000.1 | Wheat | golgi, plastid, unclear | 4.59 | 2.95 |
| TraesCS5A01G119600.1 | Wheat | plastid | 4.26 | 2.85 |
| TraesCS5B01G116300.1 | Wheat | golgi, unclear | 4.26 | 2.83 |
| TraesCS5D01G212800.1 | Wheat | plastid | 4.26 | 2.81 |
| Os12t0182200-01 | Rice | plastid | 3.93 | 2.57 |
| Solyc11g017250.1.1 | Tomato | plastid | 3.93 | 2.56 |
| Zm00001d023606_P005 | Maize | plastid | 3.61 | 2.41 |
| PGSC0003DMT400023831 | Potato | plastid | 3.61 | 2.37 |
| KRG91819 | Soybean | endoplasmic reticulum, nucleus | 3.61 | 2.37 |
| AT1G34430.1 | Thale cress | plastid | 3.61 | 2.37 |
| OQU78843 | Sorghum | plastid | 3.28 | 2.18 |
| KRH34962 | Soybean | plastid | 3.28 | 2.13 |
| VIT_18s0072g01000.t01 | Wine grape | plastid | 3.28 | 2.1 |
| TraesCS2D01G073400.1 | Wheat | mitochondrion | 3.28 | 1.97 |
| Zm00001d041839_P001 | Maize | plastid | 3.61 | 1.85 |
| GSMUA_Achr3P17420_001 | Banana | cytosol | 1.31 | 1.61 |
| TraesCS4D01G070200.1 | Wheat | mitochondrion | 1.97 | 1.37 |
| TraesCS2D01G039500.2 | Wheat | mitochondrion | 1.97 | 1.35 |
| TraesCS7D01G301900.1 | Wheat | golgi | 1.97 | 1.15 |
| TraesCS7D01G011600.1 | Wheat | golgi, mitochondrion | 1.97 | 1.11 |
| TraesCS6D01G024400.1 | Wheat | golgi, mitochondrion | 1.64 | 0.92 |
| HORVU5Hr1G038090.3 | Barley | plastid | 0.0 | 0.0 |
| CDY69187 | Canola | cytosol, nucleus | 0.0 | 0.0 |
| CDY34925 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY17299 | Canola | cytosol, plastid | 0.0 | 0.0 |
| Bra040295.1-P | Field mustard | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G125900.1 | EnsemblPlantsGene:TraesCS5D01G125900 | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF11 | SEG:seg |
| MapMan:20.2.3.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:192949596..192950513
Molecular Weight (calculated)
33766.6 Da
IEP (calculated)
10.423
GRAVY (calculated)
-0.474
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASSGRAE VDTSRAFRSV KEAVAVFGER ILATEAQFRP GAHANHRVVR ERSSWRDSVA IASSKEKLEG SSDLIRGSHS TSPNAIAVAI AKHEGNSSEP
101: ARIVMPVSNA QPMCLVPLSP RFQASSSPSL ARGDGYDKQD GKEANLMIMS SIKKVEEEAA KTRLEAVQVK RRLADLELAM ANLKAKLHRA LSRLAYMEAD
201: KAAAARANIQ QRDINTSALT VWAEAKTERH PLRHLLSLDD ADEEVKHGQE REMTTTTTKR KMQKQKPIMP LVVPLISEVL FSKKKRMNDK ESLYLKELYS
301: LLRLS
101: ARIVMPVSNA QPMCLVPLSP RFQASSSPSL ARGDGYDKQD GKEANLMIMS SIKKVEEEAA KTRLEAVQVK RRLADLELAM ANLKAKLHRA LSRLAYMEAD
201: KAAAARANIQ QRDINTSALT VWAEAKTERH PLRHLLSLDD ADEEVKHGQE REMTTTTTKR KMQKQKPIMP LVVPLISEVL FSKKKRMNDK ESLYLKELYS
301: LLRLS
001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
Arabidopsis Description
At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.