Factsheet for TraesCS5B01G116300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 6
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G035100.1
TraesCS2A01G451100.1
TraesCS2B01G048200.1
TraesCS2B01G472600.1
TraesCS2D01G034400.1
TraesCS2D01G450800.1
TraesCS4A01G120600.1
TraesCS4A01G288600.1
TraesCS4B01G026200.1
TraesCS4B01G184400.1
TraesCS4D01G023600.1
TraesCS4D01G185400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	TraesCS2A01G035100.1	AT2G47400.1	21798944
AT1G34430.1	TraesCS2B01G048200.1	AT2G47400.1	21798944
AT1G34430.1	TraesCS2D01G034400.1	AT2G47400.1	21798944
AT1G34430.1	TraesCS4A01G120600.1	AT2G47400.1	21798944
AT1G34430.1	TraesCS4B01G184400.1	AT2G47400.1	21798944
AT1G34430.1	TraesCS4D01G185400.1	AT2G47400.1	21798944
AT1G34430.1	TraesCS2A01G451100.1	AT3G17668.1	21798944
AT1G34430.1	TraesCS2B01G472600.1	AT3G17668.1	21798944
AT1G34430.1	TraesCS2D01G450800.1	AT3G17668.1	21798944
AT1G34430.1	TraesCS4A01G288600.1	AT3G18140.1	21798944
AT1G34430.1	TraesCS4B01G026200.1	AT3G18140.1	21798944
AT1G34430.1	TraesCS4D01G023600.1	AT3G18140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G126000.1	Wheat	cytosol	87.58	98.53
TraesCS5A01G119600.1	Wheat	plastid	97.17	97.81
Zm00001d023606_P005	Maize	plastid	89.98	90.37
OQU78843	Sorghum	plastid	88.45	88.65
Os12t0182200-01	Rice	plastid	86.71	85.22
HORVU5Hr1G038090.3	Barley	plastid	70.59	75.17
KRG91819	Soybean	endoplasmic reticulum, nucleus	72.55	71.61
KRH34962	Soybean	plastid	72.77	71.22
VIT_18s0072g01000.t01	Wine grape	plastid	72.77	70.02
Solyc11g017250.1.1	Tomato	plastid	71.02	69.66
PGSC0003DMT400023831	Potato	plastid	69.5	68.75
AT1G34430.1	Thale cress	plastid	69.5	68.6
Zm00001d041839_P001	Maize	plastid	86.93	67.28
TraesCS5B01G489600.1	Wheat	golgi	66.01	63.79
GSMUA_Achr3P17420_001	Banana	cytosol	33.33	61.45
TraesCS3B01G372900.1	Wheat	plastid	59.48	60.13
TraesCS5B01G204800.1	Wheat	plastid	60.35	59.83
TraesCS7B01G205500.1	Wheat	mitochondrion	27.02	28.05
TraesCS6B01G028600.1	Wheat	mitochondrion	28.98	25.0
TraesCS2B01G053600.1	Wheat	mitochondrion	18.95	20.37
TraesCS4B01G071300.1	Wheat	mitochondrion	18.52	19.41
CDY34925	Canola	mitochondrion	9.8	17.51
Bra040295.1-P	Field mustard	mitochondrion	9.8	17.51
TraesCS5D01G125900.1	Wheat	plastid	2.83	4.26
CDY69187	Canola	cytosol, nucleus	0.0	0.0
CDY17299	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF61	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	EnsemblPlantsGene:TraesCS5B01G116300	EnsemblPlants:TraesCS5B01G116300.1	TIGR:cd06849	SEG:seg

Description

No Description!

Coordinates

chr5B:-:198029863..198032847

Molecular Weight (calculated)

47733.4 Da

IEP (calculated)

8.961

GRAVY (calculated)

0.041

Length

459 amino acids

Sequence
(BLAST)

001: MAGLLHLHST LLPSASLLRQ RGGAQAVPRR RRACRVEAKI REIFMPALSS TMTEGKIVAW NAAEGDRLAK GDPVVVVESD KADMDVETFH NGFLAAVLVP
101: AGESAPVGSA IALLAESEEE IPLARSQAAN FSSSAAASPP APQETVAQEA SPAPPPPPPP APVAVSAPAP PSPATQGGAR VVASPYAKKL AKELSVDLFA
201: VTGSGPGGRV VAKDVEAAAA APKKAAPVPA ARQDVPLGST VPFTTMQGAV SKNMVESLAV PAFRVGYTIT TDALDALYKK IKAKGVTMTA LLAKATAMAL
301: VQHPVVNSSC RDGQSFTYNS SINIAVAVAI DGGLITPVLQ DADKLDIYSL SRKWKELVDK ARAKQLQPQE YNSGTFTLSN LGMFGVDRFD AILPPGTGAI
401: MAVGSSQPTV VGTKDGRIGI KSQMQVNVTA DHRVIYGSDL AAFLQTLSKI IEDSKDLTF

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.