Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G184400.1 | Wheat | plastid | 90.0 | 90.0 |
| TraesCS4A01G120600.1 | Wheat | plastid | 80.0 | 80.0 |
| Os03t0306800-01 | Rice | extracellular | 67.69 | 67.18 |
| HORVU4Hr1G053940.2 | Barley | plastid | 72.31 | 59.12 |
| Zm00001d028880_P001 | Maize | plastid | 52.31 | 53.97 |
| EER94980 | Sorghum | plastid | 53.85 | 53.85 |
| CDX67892 | Canola | plastid | 51.54 | 51.94 |
| Bra003499.1-P | Field mustard | plastid | 51.54 | 51.94 |
| CDY25110 | Canola | plastid | 51.54 | 51.94 |
| Bra007678.1-P | Field mustard | plastid | 50.77 | 50.77 |
| CDY11420 | Canola | plastid | 50.77 | 50.77 |
| CDX76635 | Canola | plastid | 50.0 | 50.39 |
| CDY51422 | Canola | plastid | 47.69 | 50.0 |
| AT2G47400.1 | Thale cress | plastid | 46.92 | 49.19 |
| Bra021396.1-P | Field mustard | plastid | 46.92 | 49.19 |
| GSMUA_Achr11P... | Banana | plastid | 48.46 | 48.84 |
| Bra004459.1-P | Field mustard | plastid | 47.69 | 48.82 |
| CDX95723 | Canola | plastid | 46.92 | 48.41 |
| CDX80101 | Canola | plastid | 46.92 | 48.41 |
| CDY55379 | Canola | plastid | 46.92 | 48.41 |
| GSMUA_Achr8P10530_001 | Banana | plastid | 46.92 | 47.66 |
| CDY27491 | Canola | plastid | 45.38 | 47.2 |
| TraesCS2D01G034400.1 | Wheat | plastid | 45.38 | 46.83 |
| AT3G62410.1 | Thale cress | plastid | 46.92 | 46.56 |
| CDX83329 | Canola | plastid | 44.62 | 46.03 |
| Bra000451.1-P | Field mustard | plastid | 44.62 | 46.03 |
| PGSC0003DMT400018798 | Potato | cytosol | 44.62 | 46.03 |
| Solyc06g009630.1.1 | Tomato | plastid | 44.62 | 45.67 |
| KRH69219 | Soybean | plastid | 44.62 | 45.31 |
| PGSC0003DMT400023336 | Potato | plastid | 40.77 | 42.74 |
| Solyc01g079470.2.1 | Tomato | plastid | 40.77 | 42.74 |
| KRH68260 | Soybean | plastid | 43.08 | 42.42 |
| KRH31794 | Soybean | plastid | 41.54 | 41.86 |
| KRG96526 | Soybean | nucleus | 44.62 | 35.15 |
| VIT_01s0026g02480.t01 | Wine grape | extracellular | 46.15 | 30.46 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G185400.1 | EnsemblPlantsGene:TraesCS4D01G185400 | InterPro:DUF_CP12 | PANTHER:PTHR33921 | PANTHER:PTHR33921:SF9 | PFAM:PF02672 |
| SEG:seg | SMART:SM01093 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:323354573..323354965
Molecular Weight (calculated)
14063.3 Da
IEP (calculated)
4.496
GRAVY (calculated)
-0.563
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MATITTMAFM ATFRAPRTVA QPPATLPSRP DVVSFAARAM RAHGRRLVAV AGSPSTPPEL AQKVTESIKQ AEETCAGDPE GGECVAAWDE VEELSAAASH
101: ARDRKKEHSD PLEEFCEDNP ETDECRTYDS
101: ARDRKKEHSD PLEEFCEDNP ETDECRTYDS
001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N
Arabidopsis Description
CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.