Factsheet for Bra003499.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra023235.1-P
Bra024548.1-P
Bra025219.1-P
Bra027469.1-P
Bra032939.1-P
Bra033861.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62410.1	Bra012351.1-P	AT1G22920.1	21798944
AT3G62410.1	Bra024548.1-P	AT1G22920.1	21798944
AT3G62410.1	Bra023235.1-P	AT1G32060.1	17947231
AT3G62410.1	Bra033861.1-P	AT1G32060.1	17947231
AT3G62410.1	Bra025219.1-P	AT3G26650.1	17947231
AT3G62410.1	Bra032939.1-P	AT3G26650.1	17947231
AT3G62410.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67892	Canola	plastid	97.67	97.67
CDY25110	Canola	plastid	94.57	94.57
Bra007678.1-P	Field mustard	plastid	82.95	82.31
AT3G62410.1	Thale cress	plastid	82.17	80.92
Bra021396.1-P	Field mustard	plastid	65.89	68.55
Bra004459.1-P	Field mustard	plastid	66.67	67.72
Bra000451.1-P	Field mustard	plastid	65.89	67.46
Solyc06g009630.1.1	Tomato	plastid	54.26	55.12
GSMUA_Achr1P13010_001	Banana	plastid	55.04	55.04
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	52.71	54.84
GSMUA_Achr11P...	Banana	plastid	54.26	54.26
Solyc01g079470.2.1	Tomato	plastid	51.94	54.03
KRH69219	Soybean	plastid	53.49	53.91
Os03t0306800-01	Rice	extracellular	54.26	53.44
TraesCS2B01G048200.1	Wheat	plastid	51.94	53.17
TraesCS2A01G035100.1	Wheat	plastid	51.94	53.17
TraesCS4B01G184400.1	Wheat	plastid	53.49	53.08
KRH68260	Soybean	plastid	54.26	53.03
TraesCS2D01G034400.1	Wheat	plastid	51.16	52.38
KRH31794	Soybean	plastid	51.94	51.94
PGSC0003DMT400023336	Potato	plastid	49.61	51.61
TraesCS4D01G185400.1	Wheat	plastid	51.94	51.54
PGSC0003DMT400018798	Potato	cytosol	48.84	50.0
GSMUA_Achr8P10530_001	Banana	plastid	49.61	50.0
TraesCS4A01G120600.1	Wheat	plastid	50.39	50.0
GSMUA_Achr11P...	Banana	plastid	49.61	49.61
EER88061	Sorghum	plastid	47.29	47.29
EER94980	Sorghum	plastid	46.51	46.15
Zm00001d028880_P001	Maize	plastid	44.19	45.24
Zm00001d044925_P001	Maize	plastid	48.06	44.29
KRG96526	Soybean	nucleus	54.26	42.42
HORVU4Hr1G053940.2	Barley	plastid	49.61	40.25
VIT_01s0026g02480.t01	Wine grape	extracellular	52.71	34.52
Bra015733.1-P	Field mustard	plastid	31.78	30.37

Protein Annotations

EnsemblPlants:Bra003499.1	EnsemblPlants:Bra003499.1-P	EnsemblPlantsGene:Bra003499	InterPro:DUF_CP12	PANTHER:PTHR33921	PANTHER:PTHR33921:SF9
PFAM:PF02672	SMART:SM01093	UniParc:UPI00025418E7	UniProt:M4CH16	MapMan:35.1	:

Description

AT3G62410 (E=1e-054) CP12-2, CP12 | CP12-2; protein binding

Coordinates

chrA07:+:13491276..13491665

Molecular Weight (calculated)

13860.1 Da

IEP (calculated)

4.461

GRAVY (calculated)

-0.502

Length

129 amino acids

Sequence
(BLAST)

001: MATIAATSLN IGIQLAVITS EARPVSLAGP VRLNNPWNLG SRTTNRMAAV RPVKATPEGV ISDKVEKSIK DAEETCAGDP VSGECVAAWD EVEELSAAAS
101: HARDKKKDSD PLEEYCKDNP ETNECRTYD

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.