Factsheet for PGSC0003DMT400023336

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023831
PGSC0003DMT400023896
PGSC0003DMT400024090
PGSC0003DMT400030050
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400069203
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	PGSC0003DMT400023831	AT1G34430.1	21798944
AT2G47400.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT2G47400.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT2G47400.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT2G47400.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT2G47400.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT2G47400.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT2G47400.1	PGSC0003DMT400077934	AT3G46090.1	17259181
AT3G62410.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT3G62410.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT3G62410.1	PGSC0003DMT400024090	AT1G32060.1	17947231
AT3G62410.1	PGSC0003DMT400030050	AT3G26650.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079470.2.1	Tomato	plastid	70.97	70.97
PGSC0003DMT400018798	Potato	cytosol	66.13	65.08
KRH69219	Soybean	plastid	54.03	52.34
Bra003499.1-P	Field mustard	plastid	51.61	49.61
CDX67892	Canola	plastid	51.61	49.61
CDY25110	Canola	plastid	51.61	49.61
CDY27491	Canola	plastid	50.0	49.6
Bra007678.1-P	Field mustard	plastid	50.81	48.46
CDY11420	Canola	plastid	50.81	48.46
AT2G47400.1	Thale cress	plastid	48.39	48.39
CDY51422	Canola	plastid	48.39	48.39
Bra021396.1-P	Field mustard	plastid	47.58	47.58
CDX80101	Canola	plastid	47.58	46.83
GSMUA_Achr1P13010_001	Banana	plastid	48.39	46.51
CDX95723	Canola	plastid	46.77	46.03
CDX83329	Canola	plastid	46.77	46.03
TraesCS2B01G048200.1	Wheat	plastid	46.77	46.03
CDY55379	Canola	plastid	46.77	46.03
TraesCS2A01G035100.1	Wheat	plastid	46.77	46.03
TraesCS2D01G034400.1	Wheat	plastid	46.77	46.03
Bra000451.1-P	Field mustard	plastid	46.77	46.03
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	45.97	45.97
AT3G62410.1	Thale cress	plastid	48.39	45.8
Bra004459.1-P	Field mustard	plastid	46.77	45.67
GSMUA_Achr11P...	Banana	plastid	45.97	44.19
KRH31794	Soybean	plastid	45.16	43.41
CDX76635	Canola	plastid	45.16	43.41
GSMUA_Achr8P10530_001	Banana	plastid	44.35	42.97
Os03t0306800-01	Rice	extracellular	44.35	41.98
GSMUA_Achr11P...	Banana	plastid	43.55	41.86
EER88061	Sorghum	plastid	43.55	41.86
TraesCS4A01G120600.1	Wheat	plastid	43.55	41.54
TraesCS4B01G184400.1	Wheat	plastid	43.55	41.54
TraesCS4D01G185400.1	Wheat	plastid	42.74	40.77
KRH68260	Soybean	plastid	42.74	40.15
EER94980	Sorghum	plastid	40.32	38.46
Zm00001d028880_P001	Maize	plastid	37.9	37.3
KRG96526	Soybean	nucleus	46.77	35.15
Zm00001d044925_P001	Maize	plastid	39.52	35.0
HORVU4Hr1G053940.2	Barley	plastid	44.35	34.59
VIT_01s0026g02480.t01	Wine grape	extracellular	53.23	33.5
PGSC0003DMT400025712	Potato	plastid	29.03	29.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400023336	EnsemblPlantsGene:PGSC0003DMG400009042	EntrezGene:102600488	InterPro:DUF_CP12	PANTHER:PTHR33921	PANTHER:PTHR33921:SF9
PFAM:PF02672	PGSC:PGSC0003DMG400009042	RefSeq:XP_006349189.1	SEG:seg	SMART:SM01093	UniParc:UPI000296AE56
UniProt:M1AI65	MapMan:35.2	:	:	:	:

Description

CP12 [Source:PGSC_GENE;Acc:PGSC0003DMG400009042]

Coordinates

chr1:-:62723718..62724360

Molecular Weight (calculated)

13333.3 Da

IEP (calculated)

4.758

GRAVY (calculated)

-0.662

Length

124 amino acids

Sequence
(BLAST)

001: MATIAGVSLT SPKFLAKNSN SPNSKPFKFP CLNNPWKKSS TKFGLVCAAT PDNKLSDLVA DSVKGAEEAC NENPASGECA AAWDVVEEAS AAASHARDKK
101: KQEDVLENYC KENPETDECR TYDS

Best Arabidopsis Sequence Match ( AT2G47400.1 )
(BLAST)

001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN

Arabidopsis Description

CP12-1Calvin cycle protein CP12-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22914]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.